Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06560

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
1,451,177	+				-0.1
1,451,178	-				+1.3
1,451,178	-				-1.0
1,451,178	-				-0.6
1,451,178	-				-1.0
1,451,178	-				-1.0
1,451,178	-				+0.9
1,451,178	-				-0.4
1,451,178	-				-0.4
1,451,441	+	ahpC	OKGIIK_06555	0.17	-0.0
1,451,441	+	ahpC	OKGIIK_06555	0.17	-0.4
1,451,442	-	ahpC	OKGIIK_06555	0.17	-2.7
1,451,630	+	ahpC	OKGIIK_06555	0.50	-1.5
1,451,631	-	ahpC	OKGIIK_06555	0.50	-1.0
1,451,705	+	ahpC	OKGIIK_06555	0.63	-0.0
1,451,705	+	ahpC	OKGIIK_06555	0.63	-1.5
1,451,706	-	ahpC	OKGIIK_06555	0.64	-2.6
1,451,706	-	ahpC	OKGIIK_06555	0.64	-2.0
1,451,739	-	ahpC	OKGIIK_06555	0.70	-2.6
1,451,739	-	ahpC	OKGIIK_06555	0.70	+0.6
1,451,739	-	ahpC	OKGIIK_06555	0.70	+0.5
1,451,739	-	ahpC	OKGIIK_06555	0.70	-0.7
1,451,795	+	ahpC	OKGIIK_06555	0.79	-1.5
1,451,952	+				-0.5
1,451,952	+				+0.9
1,451,952	+				-0.2
1,451,952	+				+0.3
1,451,953	-				+1.0
1,451,953	-				+1.0
1,451,953	-				-1.4
1,451,953	-				-0.3
1,451,953	-				-2.6
1,451,953	-				-0.6
1,452,093	+				-1.7
1,452,094	-				-0.9
1,452,542	-	gltP	OKGIIK_06560	0.34	-0.7
1,452,570	+	gltP	OKGIIK_06560	0.36	+0.6
1,452,570	+	gltP	OKGIIK_06560	0.36	-0.4
1,452,570	+	gltP	OKGIIK_06560	0.36	+0.1
1,452,571	-	gltP	OKGIIK_06560	0.36	+0.3
1,452,571	-	gltP	OKGIIK_06560	0.36	+1.6
1,452,571	-	gltP	OKGIIK_06560	0.36	+0.6
1,452,571	-	gltP	OKGIIK_06560	0.36	+0.4
1,452,714	+	gltP	OKGIIK_06560	0.47	+1.0
1,452,714	+	gltP	OKGIIK_06560	0.47	-2.3
1,452,714	+	gltP	OKGIIK_06560	0.47	-0.9
1,452,714	+	gltP	OKGIIK_06560	0.47	-1.7
1,452,714	+	gltP	OKGIIK_06560	0.47	-2.2
1,452,714	+	gltP	OKGIIK_06560	0.47	-2.6
1,452,714	+	gltP	OKGIIK_06560	0.47	+1.5
1,452,714	+	gltP	OKGIIK_06560	0.47	-2.2
1,452,714	+	gltP	OKGIIK_06560	0.47	-0.0
1,452,715	-	gltP	OKGIIK_06560	0.47	+0.7
1,452,715	-	gltP	OKGIIK_06560	0.47	+1.9
1,452,715	-	gltP	OKGIIK_06560	0.47	-0.0
1,452,715	-	gltP	OKGIIK_06560	0.47	+1.5
1,452,715	-	gltP	OKGIIK_06560	0.47	-0.4
1,452,715	-	gltP	OKGIIK_06560	0.47	-0.1
1,452,715	-	gltP	OKGIIK_06560	0.47	-0.5
1,452,715	-	gltP	OKGIIK_06560	0.47	-0.8
1,452,715	-	gltP	OKGIIK_06560	0.47	-2.6
1,452,715	-	gltP	OKGIIK_06560	0.47	-1.3
1,452,715	-	gltP	OKGIIK_06560	0.47	+0.8
1,452,715	-	gltP	OKGIIK_06560	0.47	+0.3
1,452,715	-	gltP	OKGIIK_06560	0.47	+0.3
1,452,715	-	gltP	OKGIIK_06560	0.47	+0.6
1,452,950	+	gltP	OKGIIK_06560	0.65	+0.3
1,452,951	-	gltP	OKGIIK_06560	0.65	+0.4
1,452,951	-	gltP	OKGIIK_06560	0.65	-0.3
1,452,951	-	gltP	OKGIIK_06560	0.65	-0.0
1,453,020	+	gltP	OKGIIK_06560	0.70	+0.0
1,453,020	+	gltP	OKGIIK_06560	0.70	-0.7
1,453,021	-	gltP	OKGIIK_06560	0.71	-0.6
1,453,021	-	gltP	OKGIIK_06560	0.71	-1.3
1,453,021	-	gltP	OKGIIK_06560	0.71	-0.8
1,453,021	-	gltP	OKGIIK_06560	0.71	-1.4
1,453,021	-	gltP	OKGIIK_06560	0.71	-1.0
1,453,021	-	gltP	OKGIIK_06560	0.71	-1.0
1,453,030	+	gltP	OKGIIK_06560	0.71	+2.0
1,453,030	+	gltP	OKGIIK_06560	0.71	+0.7
1,453,030	+	gltP	OKGIIK_06560	0.71	-0.2
1,453,030	+	gltP	OKGIIK_06560	0.71	+0.3
1,453,030	+	gltP	OKGIIK_06560	0.71	-0.2
1,453,030	+	gltP	OKGIIK_06560	0.71	-0.3
1,453,030	+	gltP	OKGIIK_06560	0.71	+0.6
1,453,030	+	gltP	OKGIIK_06560	0.71	+1.0
1,453,031	-	gltP	OKGIIK_06560	0.71	-1.0
1,453,031	-	gltP	OKGIIK_06560	0.71	-0.3
1,453,031	-	gltP	OKGIIK_06560	0.71	+0.5
1,453,031	-	gltP	OKGIIK_06560	0.71	-1.5
1,453,031	-	gltP	OKGIIK_06560	0.71	+1.1
1,453,031	-	gltP	OKGIIK_06560	0.71	+1.6
1,453,031	-	gltP	OKGIIK_06560	0.71	-0.5
1,453,031	-	gltP	OKGIIK_06560	0.71	-0.7
1,453,031	-	gltP	OKGIIK_06560	0.71	+1.1
1,453,117	+	gltP	OKGIIK_06560	0.78	+0.7
1,453,117	+	gltP	OKGIIK_06560	0.78	+0.2
1,453,117	+	gltP	OKGIIK_06560	0.78	-1.0
1,453,420	+				+1.3
1,453,420	+				-0.8
1,453,420	+				+0.1
1,453,420	+				-2.2
1,453,421	-				-0.7
1,453,421	-				-0.3
1,453,421	-				+0.1
1,453,421	-				+0.8
1,453,421	-				+0.5
1,453,421	-				-1.4
1,453,421	-				-0.0
1,453,546	+				-0.3
1,453,547	-				+0.1
1,453,660	+				+0.0
1,453,660	+				-0.4
1,453,660	+				+0.7
1,453,660	+				-1.8
1,453,660	+				+0.1
1,453,661	-				+1.3
1,453,661	-				-0.7
1,453,661	-				-1.3
1,453,661	-				-2.3
1,453,661	-				-1.0
1,453,661	-				-1.7
1,453,690	+	prpB	OKGIIK_06565	0.13	+0.3
1,453,691	-	prpB	OKGIIK_06565	0.13	+0.9
1,453,702	+	prpB	OKGIIK_06565	0.15	-2.1
1,453,702	+	prpB	OKGIIK_06565	0.15	+0.4
1,453,703	-	prpB	OKGIIK_06565	0.15	-1.9
1,453,703	-	prpB	OKGIIK_06565	0.15	-1.3
1,453,703	-	prpB	OKGIIK_06565	0.15	-0.7
1,453,703	-	prpB	OKGIIK_06565	0.15	-0.7
1,453,703	-	prpB	OKGIIK_06565	0.15	-0.5
1,453,703	-	prpB	OKGIIK_06565	0.15	-2.0
1,453,703	-	prpB	OKGIIK_06565	0.15	-2.6
1,453,703	-	prpB	OKGIIK_06565	0.15	+0.4
1,454,275	+	prpB	OKGIIK_06565	0.79	-0.5
1,454,276	-	prpB	OKGIIK_06565	0.79	-2.2
1,454,276	-	prpB	OKGIIK_06565	0.79	-1.7
1,454,276	-	prpB	OKGIIK_06565	0.79	-1.4
1,454,276	-	prpB	OKGIIK_06565	0.79	-1.2
1,454,276	-	prpB	OKGIIK_06565	0.79	-0.3
1,454,276	-	prpB	OKGIIK_06565	0.79	-1.5
1,454,276	-	prpB	OKGIIK_06565	0.79	-0.7
1,454,276	-	prpB	OKGIIK_06565	0.79	-2.4
1,454,393	-				-0.4
1,454,393	-				-1.3
1,454,393	-				+0.3
1,454,393	-				-0.7
1,454,393	-				+0.3