Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt grxD and yqjQ overlap by 4 nucleotides yqjQ and marC are separated by 54 nucleotides marC and OKGIIK_03075 are separated by 99 nucleotides
OKGIIK_03060: grxD - Grx4 family monothiol glutaredoxin, at 694,668 to 694,991
grxD
OKGIIK_03065: yqjQ - Short-chain dehydrogenase, at 694,988 to 695,758
yqjQ
OKGIIK_03070: marC - YhgN family NAAT transporter, at 695,813 to 696,424
marC
OKGIIK_03075: OKGIIK_03075 - glycerol acyltransferase, at 696,524 to 698,236
_03075
Position (kb) 695
696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 695.078 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.253 kb on - strand, within yqjQ at 695.511 kb on - strand, within yqjQ at 695.636 kb on + strand, within yqjQ at 695.636 kb on + strand, within yqjQ at 695.636 kb on + strand, within yqjQ at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.697 kb on - strand at 695.697 kb on - strand at 695.697 kb on - strand at 695.697 kb on - strand at 695.697 kb on - strand at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.211 kb on + strand, within marC at 696.211 kb on + strand, within marC at 696.212 kb on - strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.376 kb on - strand at 696.482 kb on + strand at 696.482 kb on + strand at 696.483 kb on - strand at 696.483 kb on - strand at 696.483 kb on - strand at 696.483 kb on - strand at 696.532 kb on + strand at 696.532 kb on + strand at 696.533 kb on - strand at 696.834 kb on + strand, within OKGIIK_03075 at 696.834 kb on + strand, within OKGIIK_03075 at 696.949 kb on + strand, within OKGIIK_03075 at 696.949 kb on + strand, within OKGIIK_03075 at 696.949 kb on + strand, within OKGIIK_03075 at 696.949 kb on + strand, within OKGIIK_03075 at 696.949 kb on + strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.950 kb on - strand, within OKGIIK_03075 at 696.953 kb on + strand, within OKGIIK_03075 at 696.953 kb on + strand, within OKGIIK_03075 at 696.953 kb on + strand, within OKGIIK_03075 at 696.953 kb on + strand, within OKGIIK_03075 at 696.953 kb on + strand, within OKGIIK_03075 at 696.953 kb on + strand, within OKGIIK_03075 at 696.953 kb on + strand, within OKGIIK_03075 at 696.954 kb on - strand, within OKGIIK_03075 at 696.954 kb on - strand, within OKGIIK_03075 at 696.954 kb on - strand, within OKGIIK_03075 at 696.954 kb on - strand, within OKGIIK_03075 at 696.954 kb on - strand, within OKGIIK_03075 at 697.130 kb on + strand, within OKGIIK_03075 at 697.130 kb on + strand, within OKGIIK_03075 at 697.130 kb on + strand, within OKGIIK_03075 at 697.130 kb on + strand, within OKGIIK_03075 at 697.130 kb on + strand, within OKGIIK_03075 at 697.131 kb on - strand, within OKGIIK_03075 at 697.131 kb on - strand, within OKGIIK_03075 at 697.131 kb on - strand, within OKGIIK_03075 at 697.131 kb on - strand, within OKGIIK_03075 at 697.131 kb on - strand, within OKGIIK_03075
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 695,078 + yqjQ OKGIIK_03065 0.12 +1.2 695,174 + yqjQ OKGIIK_03065 0.24 -0.8 695,174 + yqjQ OKGIIK_03065 0.24 -1.1 695,174 + yqjQ OKGIIK_03065 0.24 +0.6 695,252 + yqjQ OKGIIK_03065 0.34 -1.3 695,252 + yqjQ OKGIIK_03065 0.34 -1.1 695,252 + yqjQ OKGIIK_03065 0.34 -1.1 695,252 + yqjQ OKGIIK_03065 0.34 -1.8 695,252 + yqjQ OKGIIK_03065 0.34 -0.5 695,252 + yqjQ OKGIIK_03065 0.34 +0.0 695,253 - yqjQ OKGIIK_03065 0.34 +0.8 695,511 - yqjQ OKGIIK_03065 0.68 +0.8 695,636 + yqjQ OKGIIK_03065 0.84 +0.0 695,636 + yqjQ OKGIIK_03065 0.84 +0.4 695,636 + yqjQ OKGIIK_03065 0.84 -0.0 695,696 + +1.2 695,696 + +0.8 695,696 + +1.8 695,696 + +1.1 695,696 + -0.8 695,697 - +0.0 695,697 - -1.8 695,697 - +0.2 695,697 - +0.2 695,697 - -0.8 696,084 + marC OKGIIK_03070 0.44 -1.3 696,084 + marC OKGIIK_03070 0.44 -0.1 696,084 + marC OKGIIK_03070 0.44 -0.6 696,084 + marC OKGIIK_03070 0.44 -0.5 696,084 + marC OKGIIK_03070 0.44 -0.9 696,084 + marC OKGIIK_03070 0.44 -0.6 696,085 - marC OKGIIK_03070 0.44 -0.6 696,085 - marC OKGIIK_03070 0.44 -0.8 696,085 - marC OKGIIK_03070 0.44 -0.9 696,085 - marC OKGIIK_03070 0.44 +0.0 696,085 - marC OKGIIK_03070 0.44 +0.9 696,085 - marC OKGIIK_03070 0.44 -1.8 696,085 - marC OKGIIK_03070 0.44 -0.3 696,085 - marC OKGIIK_03070 0.44 -0.0 696,085 - marC OKGIIK_03070 0.44 -1.6 696,085 - marC OKGIIK_03070 0.44 +0.3 696,211 + marC OKGIIK_03070 0.65 +0.6 696,211 + marC OKGIIK_03070 0.65 -1.1 696,212 - marC OKGIIK_03070 0.65 -0.6 696,296 + marC OKGIIK_03070 0.79 -1.6 696,296 + marC OKGIIK_03070 0.79 -0.2 696,296 + marC OKGIIK_03070 0.79 -0.6 696,296 + marC OKGIIK_03070 0.79 -1.7 696,296 + marC OKGIIK_03070 0.79 -1.3 696,296 + marC OKGIIK_03070 0.79 +0.0 696,296 + marC OKGIIK_03070 0.79 -1.2 696,296 + marC OKGIIK_03070 0.79 +0.8 696,296 + marC OKGIIK_03070 0.79 -1.2 696,296 + marC OKGIIK_03070 0.79 +0.6 696,296 + marC OKGIIK_03070 0.79 -0.6 696,297 - marC OKGIIK_03070 0.79 +0.8 696,297 - marC OKGIIK_03070 0.79 -1.1 696,297 - marC OKGIIK_03070 0.79 -2.3 696,297 - marC OKGIIK_03070 0.79 +0.1 696,297 - marC OKGIIK_03070 0.79 -2.4 696,297 - marC OKGIIK_03070 0.79 -1.1 696,297 - marC OKGIIK_03070 0.79 -0.9 696,297 - marC OKGIIK_03070 0.79 -0.6 696,297 - marC OKGIIK_03070 0.79 -1.6 696,376 - -0.3 696,482 + +1.2 696,482 + +0.3 696,483 - -1.6 696,483 - -0.5 696,483 - -1.6 696,483 - -3.3 696,532 + +0.9 696,532 + -0.3 696,533 - -0.8 696,834 + OKGIIK_03075 0.18 -0.3 696,834 + OKGIIK_03075 0.18 -0.9 696,949 + OKGIIK_03075 0.25 -1.1 696,949 + OKGIIK_03075 0.25 +0.3 696,949 + OKGIIK_03075 0.25 -0.3 696,949 + OKGIIK_03075 0.25 +0.8 696,949 + OKGIIK_03075 0.25 +0.2 696,950 - OKGIIK_03075 0.25 +0.8 696,950 - OKGIIK_03075 0.25 -0.3 696,950 - OKGIIK_03075 0.25 -0.0 696,950 - OKGIIK_03075 0.25 +0.8 696,950 - OKGIIK_03075 0.25 -1.2 696,950 - OKGIIK_03075 0.25 -0.8 696,950 - OKGIIK_03075 0.25 -0.5 696,950 - OKGIIK_03075 0.25 +0.5 696,950 - OKGIIK_03075 0.25 -0.3 696,950 - OKGIIK_03075 0.25 +0.7 696,950 - OKGIIK_03075 0.25 +0.2 696,950 - OKGIIK_03075 0.25 -1.5 696,950 - OKGIIK_03075 0.25 +0.8 696,953 + OKGIIK_03075 0.25 +0.4 696,953 + OKGIIK_03075 0.25 -0.3 696,953 + OKGIIK_03075 0.25 +1.5 696,953 + OKGIIK_03075 0.25 +0.9 696,953 + OKGIIK_03075 0.25 +0.1 696,953 + OKGIIK_03075 0.25 -0.2 696,953 + OKGIIK_03075 0.25 +0.4 696,954 - OKGIIK_03075 0.25 -0.3 696,954 - OKGIIK_03075 0.25 -1.8 696,954 - OKGIIK_03075 0.25 -1.1 696,954 - OKGIIK_03075 0.25 +0.7 696,954 - OKGIIK_03075 0.25 +0.4 697,130 + OKGIIK_03075 0.35 +0.2 697,130 + OKGIIK_03075 0.35 -0.1 697,130 + OKGIIK_03075 0.35 +1.2 697,130 + OKGIIK_03075 0.35 -0.1 697,130 + OKGIIK_03075 0.35 +0.0 697,131 - OKGIIK_03075 0.35 -0.6 697,131 - OKGIIK_03075 0.35 +1.1 697,131 - OKGIIK_03075 0.35 +0.2 697,131 - OKGIIK_03075 0.35 +0.8 697,131 - OKGIIK_03075 0.35 -1.1
Or see this region's nucleotide sequence