Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02975

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphoH and OKGIIK_02970 are separated by 54 nucleotidesOKGIIK_02970 and OKGIIK_02975 overlap by 4 nucleotidesOKGIIK_02975 and OKGIIK_02980 overlap by 4 nucleotidesOKGIIK_02980 and OKGIIK_02985 overlap by 4 nucleotides OKGIIK_02965: phoH - Phosphate starvation-inducible protein PhoH, putative ATPase, at 675,351 to 676,370 phoH OKGIIK_02970: OKGIIK_02970 - TetR family transcriptional regulator, at 676,425 to 677,105 _02970 OKGIIK_02975: OKGIIK_02975 - Hemolysin secretion protein D, at 677,102 to 678,073 _02975 OKGIIK_02980: OKGIIK_02980 - ABC transporter ATP-binding protein, at 678,070 to 679,029 _02980 OKGIIK_02985: OKGIIK_02985 - ABC transporter, at 679,026 to 680,135 _02985 Position (kb) 677 678 679Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 676.130 kb on - strand, within phoHat 676.182 kb on + strand, within phoHat 676.182 kb on + strand, within phoHat 676.182 kb on + strand, within phoHat 676.183 kb on - strand, within phoHat 676.183 kb on - strand, within phoHat 676.331 kb on + strandat 676.332 kb on - strandat 676.345 kb on + strandat 676.614 kb on + strand, within OKGIIK_02970at 676.614 kb on + strand, within OKGIIK_02970at 676.614 kb on + strand, within OKGIIK_02970at 676.614 kb on + strand, within OKGIIK_02970at 676.614 kb on + strand, within OKGIIK_02970at 676.615 kb on - strand, within OKGIIK_02970at 676.615 kb on - strand, within OKGIIK_02970at 676.615 kb on - strand, within OKGIIK_02970at 676.615 kb on - strand, within OKGIIK_02970at 676.615 kb on - strand, within OKGIIK_02970at 676.615 kb on - strand, within OKGIIK_02970at 676.617 kb on + strand, within OKGIIK_02970at 676.617 kb on + strand, within OKGIIK_02970at 676.617 kb on + strand, within OKGIIK_02970at 676.617 kb on + strand, within OKGIIK_02970at 676.617 kb on + strand, within OKGIIK_02970at 676.618 kb on - strand, within OKGIIK_02970at 676.618 kb on - strand, within OKGIIK_02970at 676.618 kb on - strand, within OKGIIK_02970at 676.618 kb on - strand, within OKGIIK_02970at 676.642 kb on + strand, within OKGIIK_02970at 676.642 kb on + strand, within OKGIIK_02970at 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.048 kb on + strandat 677.049 kb on - strandat 677.049 kb on - strandat 677.049 kb on - strandat 677.049 kb on - strandat 677.049 kb on - strandat 677.049 kb on - strandat 677.049 kb on - strandat 677.049 kb on - strandat 677.049 kb on - strandat 677.471 kb on + strand, within OKGIIK_02975at 677.471 kb on + strand, within OKGIIK_02975at 677.472 kb on - strand, within OKGIIK_02975at 677.474 kb on + strand, within OKGIIK_02975at 677.474 kb on + strand, within OKGIIK_02975at 677.475 kb on - strand, within OKGIIK_02975at 677.475 kb on - strand, within OKGIIK_02975at 677.507 kb on + strand, within OKGIIK_02975at 677.507 kb on + strand, within OKGIIK_02975at 677.507 kb on + strand, within OKGIIK_02975at 677.507 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.741 kb on + strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.742 kb on - strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.819 kb on + strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.820 kb on - strand, within OKGIIK_02975at 677.897 kb on + strand, within OKGIIK_02975at 677.897 kb on + strand, within OKGIIK_02975at 677.897 kb on + strand, within OKGIIK_02975at 677.898 kb on - strand, within OKGIIK_02975at 677.898 kb on - strand, within OKGIIK_02975at 677.945 kb on + strand, within OKGIIK_02975at 677.945 kb on + strand, within OKGIIK_02975at 677.945 kb on + strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.946 kb on - strand, within OKGIIK_02975at 677.948 kb on + strand, within OKGIIK_02975at 677.949 kb on - strand, within OKGIIK_02975at 677.949 kb on - strand, within OKGIIK_02975at 677.984 kb on + strandat 677.984 kb on + strandat 677.984 kb on + strandat 677.985 kb on - strandat 677.985 kb on - strandat 677.985 kb on - strandat 677.985 kb on - strandat 678.181 kb on + strand, within OKGIIK_02980at 678.182 kb on - strand, within OKGIIK_02980at 678.182 kb on - strand, within OKGIIK_02980at 678.182 kb on - strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.325 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.451 kb on + strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.452 kb on - strand, within OKGIIK_02980at 678.858 kb on + strand, within OKGIIK_02980at 678.859 kb on - strand, within OKGIIK_02980

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
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676,130 - phoH OKGIIK_02965 0.76 +0.5
676,182 + phoH OKGIIK_02965 0.81 -0.1
676,182 + phoH OKGIIK_02965 0.81 -1.6
676,182 + phoH OKGIIK_02965 0.81 -0.8
676,183 - phoH OKGIIK_02965 0.82 +1.7
676,183 - phoH OKGIIK_02965 0.82 +0.6
676,331 + -0.2
676,332 - +0.4
676,345 + -0.8
676,614 + OKGIIK_02970 0.28 -0.1
676,614 + OKGIIK_02970 0.28 -1.6
676,614 + OKGIIK_02970 0.28 -0.2
676,614 + OKGIIK_02970 0.28 +0.9
676,614 + OKGIIK_02970 0.28 -0.7
676,615 - OKGIIK_02970 0.28 -1.2
676,615 - OKGIIK_02970 0.28 -1.9
676,615 - OKGIIK_02970 0.28 -0.8
676,615 - OKGIIK_02970 0.28 -0.3
676,615 - OKGIIK_02970 0.28 +1.8
676,615 - OKGIIK_02970 0.28 +1.8
676,617 + OKGIIK_02970 0.28 +0.2
676,617 + OKGIIK_02970 0.28 +0.8
676,617 + OKGIIK_02970 0.28 +0.2
676,617 + OKGIIK_02970 0.28 -0.9
676,617 + OKGIIK_02970 0.28 +1.1
676,618 - OKGIIK_02970 0.28 -1.8
676,618 - OKGIIK_02970 0.28 +1.2
676,618 - OKGIIK_02970 0.28 -0.6
676,618 - OKGIIK_02970 0.28 -0.3
676,642 + OKGIIK_02970 0.32 +1.0
676,642 + OKGIIK_02970 0.32 -1.3
677,048 + -0.9
677,048 + -0.3
677,048 + +0.8
677,048 + +0.8
677,048 + -1.6
677,048 + -0.8
677,048 + +0.2
677,048 + -0.5
677,048 + -1.6
677,048 + -1.2
677,048 + +1.6
677,048 + -0.6
677,048 + +0.0
677,048 + -1.2
677,048 + -0.8
677,048 + -0.8
677,048 + -0.8
677,048 + -1.1
677,049 - +1.4
677,049 - +0.9
677,049 - +1.1
677,049 - +0.9
677,049 - -0.0
677,049 - -2.1
677,049 - -0.7
677,049 - -2.2
677,049 - -0.1
677,471 + OKGIIK_02975 0.38 -1.1
677,471 + OKGIIK_02975 0.38 -1.0
677,472 - OKGIIK_02975 0.38 +1.2
677,474 + OKGIIK_02975 0.38 -0.6
677,474 + OKGIIK_02975 0.38 -0.3
677,475 - OKGIIK_02975 0.38 -2.9
677,475 - OKGIIK_02975 0.38 +1.2
677,507 + OKGIIK_02975 0.42 -0.2
677,507 + OKGIIK_02975 0.42 -1.6
677,507 + OKGIIK_02975 0.42 -1.1
677,507 + OKGIIK_02975 0.42 +0.0
677,741 + OKGIIK_02975 0.66 +0.5
677,741 + OKGIIK_02975 0.66 +0.5
677,741 + OKGIIK_02975 0.66 -0.1
677,741 + OKGIIK_02975 0.66 +0.4
677,741 + OKGIIK_02975 0.66 -0.0
677,741 + OKGIIK_02975 0.66 -0.5
677,741 + OKGIIK_02975 0.66 -2.1
677,741 + OKGIIK_02975 0.66 +1.0
677,742 - OKGIIK_02975 0.66 +0.2
677,742 - OKGIIK_02975 0.66 +0.1
677,742 - OKGIIK_02975 0.66 +1.2
677,742 - OKGIIK_02975 0.66 -0.0
677,742 - OKGIIK_02975 0.66 +0.4
677,742 - OKGIIK_02975 0.66 -1.3
677,742 - OKGIIK_02975 0.66 -0.8
677,742 - OKGIIK_02975 0.66 -0.8
677,819 + OKGIIK_02975 0.74 +0.6
677,819 + OKGIIK_02975 0.74 -1.3
677,819 + OKGIIK_02975 0.74 +1.2
677,819 + OKGIIK_02975 0.74 +0.5
677,819 + OKGIIK_02975 0.74 -0.8
677,819 + OKGIIK_02975 0.74 -1.7
677,819 + OKGIIK_02975 0.74 -1.3
677,819 + OKGIIK_02975 0.74 -1.1
677,819 + OKGIIK_02975 0.74 +0.0
677,819 + OKGIIK_02975 0.74 -0.6
677,819 + OKGIIK_02975 0.74 +0.1
677,819 + OKGIIK_02975 0.74 -0.8
677,819 + OKGIIK_02975 0.74 -2.5
677,819 + OKGIIK_02975 0.74 -0.8
677,819 + OKGIIK_02975 0.74 +1.2
677,819 + OKGIIK_02975 0.74 +0.2
677,819 + OKGIIK_02975 0.74 -0.8
677,819 + OKGIIK_02975 0.74 +0.2
677,820 - OKGIIK_02975 0.74 -0.5
677,820 - OKGIIK_02975 0.74 +0.1
677,820 - OKGIIK_02975 0.74 -0.8
677,820 - OKGIIK_02975 0.74 -1.3
677,820 - OKGIIK_02975 0.74 -0.1
677,820 - OKGIIK_02975 0.74 -0.8
677,820 - OKGIIK_02975 0.74 +0.0
677,820 - OKGIIK_02975 0.74 +0.7
677,820 - OKGIIK_02975 0.74 +0.1
677,820 - OKGIIK_02975 0.74 +0.4
677,897 + OKGIIK_02975 0.82 +0.1
677,897 + OKGIIK_02975 0.82 -1.1
677,897 + OKGIIK_02975 0.82 +0.0
677,898 - OKGIIK_02975 0.82 -1.6
677,898 - OKGIIK_02975 0.82 -0.8
677,945 + OKGIIK_02975 0.87 +1.4
677,945 + OKGIIK_02975 0.87 +1.3
677,945 + OKGIIK_02975 0.87 +0.7
677,946 - OKGIIK_02975 0.87 -1.6
677,946 - OKGIIK_02975 0.87 +1.6
677,946 - OKGIIK_02975 0.87 -0.8
677,946 - OKGIIK_02975 0.87 -0.8
677,946 - OKGIIK_02975 0.87 -1.1
677,946 - OKGIIK_02975 0.87 -1.0
677,946 - OKGIIK_02975 0.87 -0.2
677,946 - OKGIIK_02975 0.87 -0.1
677,948 + OKGIIK_02975 0.87 -1.1
677,949 - OKGIIK_02975 0.87 +0.4
677,949 - OKGIIK_02975 0.87 +1.0
677,984 + +1.2
677,984 + -0.9
677,984 + +1.1
677,985 - -3.0
677,985 - -1.6
677,985 - -0.8
677,985 - -0.8
678,181 + OKGIIK_02980 0.12 -0.6
678,182 - OKGIIK_02980 0.12 -0.6
678,182 - OKGIIK_02980 0.12 +0.2
678,182 - OKGIIK_02980 0.12 +0.1
678,325 + OKGIIK_02980 0.27 +1.8
678,325 + OKGIIK_02980 0.27 +0.2
678,325 + OKGIIK_02980 0.27 -0.3
678,325 + OKGIIK_02980 0.27 +1.0
678,325 + OKGIIK_02980 0.27 -1.8
678,325 + OKGIIK_02980 0.27 -0.8
678,451 + OKGIIK_02980 0.40 -1.2
678,451 + OKGIIK_02980 0.40 -1.0
678,451 + OKGIIK_02980 0.40 -2.2
678,451 + OKGIIK_02980 0.40 -0.0
678,451 + OKGIIK_02980 0.40 +2.0
678,451 + OKGIIK_02980 0.40 -0.6
678,451 + OKGIIK_02980 0.40 -0.3
678,451 + OKGIIK_02980 0.40 +1.2
678,452 - OKGIIK_02980 0.40 -0.3
678,452 - OKGIIK_02980 0.40 -1.1
678,452 - OKGIIK_02980 0.40 -0.2
678,452 - OKGIIK_02980 0.40 -0.1
678,452 - OKGIIK_02980 0.40 -0.6
678,452 - OKGIIK_02980 0.40 +0.5
678,452 - OKGIIK_02980 0.40 -0.8
678,452 - OKGIIK_02980 0.40 +0.7
678,858 + OKGIIK_02980 0.82 -0.1
678,859 - OKGIIK_02980 0.82 -1.1

Or see this region's nucleotide sequence