Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nirK and OKGIIK_00900 are separated by 2 nucleotides OKGIIK_00900 and OKGIIK_00905 are separated by 10 nucleotides OKGIIK_00905 and OKGIIK_00910 are separated by 200 nucleotides
OKGIIK_00895: nirK - copper-containing nitrite reductase, at 196,821 to 198,347
nirK
OKGIIK_00900: OKGIIK_00900 - FGE-sulfatase domain-containing protein, at 198,350 to 199,114
_00900
OKGIIK_00905: OKGIIK_00905 - Electron transporter SenC, at 199,125 to 199,697
_00905
OKGIIK_00910: OKGIIK_00910 - Alginate-exp domain-containing protein, at 199,898 to 201,148
_00910
Position (kb) 199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.183 kb on + strand, within nirK at 198.183 kb on + strand, within nirK at 198.183 kb on + strand, within nirK at 198.183 kb on + strand, within nirK at 198.183 kb on + strand, within nirK at 198.183 kb on + strand, within nirK at 198.184 kb on - strand, within nirK at 198.184 kb on - strand, within nirK at 198.184 kb on - strand, within nirK at 198.184 kb on - strand, within nirK at 198.184 kb on - strand, within nirK at 198.184 kb on - strand, within nirK at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.246 kb on + strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.247 kb on - strand at 198.416 kb on + strand at 198.416 kb on + strand at 198.416 kb on + strand at 198.417 kb on - strand at 198.417 kb on - strand at 198.417 kb on - strand at 198.417 kb on - strand at 198.417 kb on - strand at 198.417 kb on - strand at 198.417 kb on - strand at 198.417 kb on - strand at 198.695 kb on + strand, within OKGIIK_00900 at 198.696 kb on - strand, within OKGIIK_00900 at 198.696 kb on - strand, within OKGIIK_00900 at 198.696 kb on - strand, within OKGIIK_00900 at 198.696 kb on - strand, within OKGIIK_00900 at 198.731 kb on + strand, within OKGIIK_00900 at 198.731 kb on + strand, within OKGIIK_00900 at 198.732 kb on - strand, within OKGIIK_00900 at 198.743 kb on + strand, within OKGIIK_00900 at 198.743 kb on + strand, within OKGIIK_00900 at 198.743 kb on + strand, within OKGIIK_00900 at 198.744 kb on - strand, within OKGIIK_00900 at 198.744 kb on - strand, within OKGIIK_00900 at 198.744 kb on - strand, within OKGIIK_00900 at 198.744 kb on - strand, within OKGIIK_00900 at 198.819 kb on - strand, within OKGIIK_00900 at 198.819 kb on - strand, within OKGIIK_00900 at 198.872 kb on + strand, within OKGIIK_00900 at 198.872 kb on + strand, within OKGIIK_00900 at 198.873 kb on - strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.022 kb on + strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.023 kb on - strand, within OKGIIK_00900 at 199.119 kb on + strand at 199.119 kb on + strand at 199.119 kb on + strand at 199.120 kb on - strand at 199.120 kb on - strand at 199.120 kb on - strand at 199.120 kb on - strand at 199.120 kb on - strand at 199.120 kb on - strand at 199.120 kb on - strand at 199.120 kb on - strand at 199.305 kb on + strand, within OKGIIK_00905 at 199.305 kb on + strand, within OKGIIK_00905 at 199.305 kb on + strand, within OKGIIK_00905 at 199.305 kb on + strand, within OKGIIK_00905 at 199.305 kb on + strand, within OKGIIK_00905 at 199.305 kb on + strand, within OKGIIK_00905 at 199.305 kb on + strand, within OKGIIK_00905 at 199.305 kb on + strand, within OKGIIK_00905 at 199.305 kb on + strand, within OKGIIK_00905 at 199.452 kb on + strand, within OKGIIK_00905 at 199.453 kb on - strand, within OKGIIK_00905 at 199.549 kb on - strand, within OKGIIK_00905 at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 199.723 kb on - strand at 200.180 kb on + strand, within OKGIIK_00910 at 200.180 kb on + strand, within OKGIIK_00910 at 200.180 kb on + strand, within OKGIIK_00910 at 200.180 kb on + strand, within OKGIIK_00910 at 200.180 kb on + strand, within OKGIIK_00910 at 200.180 kb on + strand, within OKGIIK_00910 at 200.180 kb on + strand, within OKGIIK_00910 at 200.180 kb on + strand, within OKGIIK_00910 at 200.181 kb on - strand, within OKGIIK_00910 at 200.181 kb on - strand, within OKGIIK_00910 at 200.181 kb on - strand, within OKGIIK_00910 at 200.181 kb on - strand, within OKGIIK_00910 at 200.210 kb on + strand, within OKGIIK_00910 at 200.354 kb on + strand, within OKGIIK_00910 at 200.354 kb on + strand, within OKGIIK_00910 at 200.552 kb on + strand, within OKGIIK_00910 at 200.552 kb on + strand, within OKGIIK_00910 at 200.552 kb on + strand, within OKGIIK_00910 at 200.552 kb on + strand, within OKGIIK_00910 at 200.552 kb on + strand, within OKGIIK_00910 at 200.552 kb on + strand, within OKGIIK_00910 at 200.552 kb on + strand, within OKGIIK_00910 at 200.552 kb on + strand, within OKGIIK_00910 at 200.553 kb on - strand, within OKGIIK_00910 at 200.553 kb on - strand, within OKGIIK_00910 at 200.553 kb on - strand, within OKGIIK_00910 at 200.553 kb on - strand, within OKGIIK_00910 at 200.553 kb on - strand, within OKGIIK_00910 at 200.553 kb on - strand, within OKGIIK_00910 at 200.678 kb on + strand, within OKGIIK_00910 at 200.678 kb on + strand, within OKGIIK_00910 at 200.678 kb on + strand, within OKGIIK_00910 at 200.678 kb on + strand, within OKGIIK_00910 at 200.678 kb on + strand, within OKGIIK_00910 at 200.678 kb on + strand, within OKGIIK_00910 at 200.678 kb on + strand, within OKGIIK_00910 at 200.679 kb on - strand, within OKGIIK_00910 at 200.679 kb on - strand, within OKGIIK_00910 at 200.679 kb on - strand, within OKGIIK_00910
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 198,183 + nirK OKGIIK_00895 0.89 -0.7 198,183 + nirK OKGIIK_00895 0.89 -0.0 198,183 + nirK OKGIIK_00895 0.89 -0.7 198,183 + nirK OKGIIK_00895 0.89 -0.7 198,183 + nirK OKGIIK_00895 0.89 -0.0 198,183 + nirK OKGIIK_00895 0.89 -0.2 198,184 - nirK OKGIIK_00895 0.89 -0.4 198,184 - nirK OKGIIK_00895 0.89 +0.4 198,184 - nirK OKGIIK_00895 0.89 +0.1 198,184 - nirK OKGIIK_00895 0.89 +0.6 198,184 - nirK OKGIIK_00895 0.89 -0.5 198,184 - nirK OKGIIK_00895 0.89 -2.3 198,246 + -0.2 198,246 + +0.3 198,246 + +0.5 198,246 + -0.7 198,246 + +0.6 198,246 + -0.3 198,246 + +0.2 198,246 + -0.5 198,246 + -0.4 198,246 + -1.1 198,246 + +0.5 198,247 - -0.3 198,247 - +0.5 198,247 - -0.3 198,247 - -1.0 198,247 - -0.2 198,247 - +0.7 198,247 - -0.5 198,247 - -0.3 198,247 - -0.0 198,247 - +0.1 198,247 - -1.0 198,247 - -1.1 198,247 - -1.3 198,247 - -0.8 198,416 + +0.3 198,416 + -0.8 198,416 + -0.3 198,417 - -1.3 198,417 - -1.5 198,417 - -1.6 198,417 - -1.0 198,417 - -1.0 198,417 - +1.0 198,417 - +0.3 198,417 - +0.1 198,695 + OKGIIK_00900 0.45 -1.7 198,696 - OKGIIK_00900 0.45 -0.7 198,696 - OKGIIK_00900 0.45 -1.7 198,696 - OKGIIK_00900 0.45 -0.7 198,696 - OKGIIK_00900 0.45 -0.7 198,731 + OKGIIK_00900 0.50 +1.2 198,731 + OKGIIK_00900 0.50 -0.7 198,732 - OKGIIK_00900 0.50 +0.7 198,743 + OKGIIK_00900 0.51 +0.3 198,743 + OKGIIK_00900 0.51 -0.7 198,743 + OKGIIK_00900 0.51 +0.8 198,744 - OKGIIK_00900 0.52 +0.4 198,744 - OKGIIK_00900 0.52 -0.9 198,744 - OKGIIK_00900 0.52 -0.7 198,744 - OKGIIK_00900 0.52 -0.6 198,819 - OKGIIK_00900 0.61 -0.1 198,819 - OKGIIK_00900 0.61 -1.6 198,872 + OKGIIK_00900 0.68 +0.6 198,872 + OKGIIK_00900 0.68 -0.7 198,873 - OKGIIK_00900 0.68 +1.2 199,022 + OKGIIK_00900 0.88 +0.5 199,022 + OKGIIK_00900 0.88 -0.2 199,022 + OKGIIK_00900 0.88 -0.7 199,022 + OKGIIK_00900 0.88 -0.0 199,022 + OKGIIK_00900 0.88 +0.2 199,022 + OKGIIK_00900 0.88 -0.5 199,022 + OKGIIK_00900 0.88 -0.0 199,022 + OKGIIK_00900 0.88 +0.2 199,022 + OKGIIK_00900 0.88 -2.7 199,023 - OKGIIK_00900 0.88 -1.3 199,023 - OKGIIK_00900 0.88 +0.7 199,023 - OKGIIK_00900 0.88 -0.7 199,023 - OKGIIK_00900 0.88 -0.2 199,023 - OKGIIK_00900 0.88 +0.8 199,023 - OKGIIK_00900 0.88 +0.2 199,023 - OKGIIK_00900 0.88 -0.5 199,023 - OKGIIK_00900 0.88 +0.3 199,023 - OKGIIK_00900 0.88 -1.1 199,023 - OKGIIK_00900 0.88 -0.7 199,119 + -0.7 199,119 + +0.0 199,119 + -1.2 199,120 - +0.0 199,120 - -0.3 199,120 - +0.7 199,120 - +0.3 199,120 - -2.1 199,120 - +0.3 199,120 - -0.3 199,120 - -0.7 199,305 + OKGIIK_00905 0.31 +0.4 199,305 + OKGIIK_00905 0.31 -0.3 199,305 + OKGIIK_00905 0.31 -1.7 199,305 + OKGIIK_00905 0.31 +0.3 199,305 + OKGIIK_00905 0.31 -1.7 199,305 + OKGIIK_00905 0.31 -0.7 199,305 + OKGIIK_00905 0.31 -1.3 199,305 + OKGIIK_00905 0.31 -1.7 199,305 + OKGIIK_00905 0.31 +1.0 199,452 + OKGIIK_00905 0.57 -1.1 199,453 - OKGIIK_00905 0.57 -2.1 199,549 - OKGIIK_00905 0.74 +0.1 199,723 - -0.0 199,723 - +1.0 199,723 - -0.7 199,723 - -0.8 199,723 - +0.9 199,723 - -0.9 199,723 - -1.0 199,723 - -1.5 199,723 - -2.3 199,723 - +0.3 199,723 - -0.6 199,723 - -1.3 199,723 - +0.9 199,723 - +0.2 199,723 - -1.5 200,180 + OKGIIK_00910 0.23 -2.8 200,180 + OKGIIK_00910 0.23 -1.3 200,180 + OKGIIK_00910 0.23 -0.3 200,180 + OKGIIK_00910 0.23 -0.4 200,180 + OKGIIK_00910 0.23 -2.1 200,180 + OKGIIK_00910 0.23 +1.5 200,180 + OKGIIK_00910 0.23 -1.0 200,180 + OKGIIK_00910 0.23 -0.7 200,181 - OKGIIK_00910 0.23 -0.1 200,181 - OKGIIK_00910 0.23 -0.3 200,181 - OKGIIK_00910 0.23 -1.7 200,181 - OKGIIK_00910 0.23 +2.3 200,210 + OKGIIK_00910 0.25 -1.0 200,354 + OKGIIK_00910 0.36 -1.8 200,354 + OKGIIK_00910 0.36 +2.1 200,552 + OKGIIK_00910 0.52 +0.0 200,552 + OKGIIK_00910 0.52 +0.2 200,552 + OKGIIK_00910 0.52 +0.8 200,552 + OKGIIK_00910 0.52 -1.7 200,552 + OKGIIK_00910 0.52 -1.8 200,552 + OKGIIK_00910 0.52 -1.8 200,552 + OKGIIK_00910 0.52 -1.3 200,552 + OKGIIK_00910 0.52 +0.0 200,553 - OKGIIK_00910 0.52 -0.5 200,553 - OKGIIK_00910 0.52 +1.6 200,553 - OKGIIK_00910 0.52 -0.6 200,553 - OKGIIK_00910 0.52 +0.3 200,553 - OKGIIK_00910 0.52 +0.3 200,553 - OKGIIK_00910 0.52 -0.2 200,678 + OKGIIK_00910 0.62 +0.6 200,678 + OKGIIK_00910 0.62 -0.5 200,678 + OKGIIK_00910 0.62 +1.3 200,678 + OKGIIK_00910 0.62 +1.1 200,678 + OKGIIK_00910 0.62 +0.3 200,678 + OKGIIK_00910 0.62 +0.6 200,678 + OKGIIK_00910 0.62 +0.2 200,679 - OKGIIK_00910 0.62 -0.1 200,679 - OKGIIK_00910 0.62 -0.7 200,679 - OKGIIK_00910 0.62 +0.4
Or see this region's nucleotide sequence