Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05450 and MPMX19_05451 are separated by 441 nucleotides MPMX19_05451 and MPMX19_05452 are separated by 744 nucleotides
MPMX19_05450: MPMX19_05450 - IS5 family transposase ISAzs10, at 136,964 to 138,040
_05450
MPMX19_05451: MPMX19_05451 - hypothetical protein, at 138,482 to 140,560
_05451
MPMX19_05452: MPMX19_05452 - hypothetical protein, at 141,305 to 141,742
_05452
Position (kb)
138
139
140
141 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 138.165 kb on + strand at 138.165 kb on + strand at 138.271 kb on + strand at 138.317 kb on + strand at 138.317 kb on + strand at 138.317 kb on + strand at 138.318 kb on - strand at 138.318 kb on - strand at 138.429 kb on - strand at 138.433 kb on - strand at 138.461 kb on - strand at 138.481 kb on + strand at 138.517 kb on + strand at 138.517 kb on + strand at 138.518 kb on - strand at 138.518 kb on - strand at 138.518 kb on - strand at 138.522 kb on + strand at 138.555 kb on + strand at 138.556 kb on - strand at 138.556 kb on - strand at 138.556 kb on - strand at 138.556 kb on - strand at 138.556 kb on - strand at 138.638 kb on - strand at 138.667 kb on + strand at 138.667 kb on + strand at 138.668 kb on - strand at 138.780 kb on - strand, within MPMX19_05451 at 138.780 kb on - strand, within MPMX19_05451 at 138.819 kb on - strand, within MPMX19_05451 at 138.963 kb on - strand, within MPMX19_05451 at 139.002 kb on - strand, within MPMX19_05451 at 139.013 kb on + strand, within MPMX19_05451 at 139.013 kb on + strand, within MPMX19_05451 at 139.015 kb on + strand, within MPMX19_05451 at 139.016 kb on - strand, within MPMX19_05451 at 139.016 kb on - strand, within MPMX19_05451 at 139.201 kb on - strand, within MPMX19_05451 at 139.209 kb on + strand, within MPMX19_05451 at 139.209 kb on + strand, within MPMX19_05451 at 139.211 kb on + strand, within MPMX19_05451 at 139.211 kb on + strand, within MPMX19_05451 at 139.212 kb on - strand, within MPMX19_05451 at 139.212 kb on - strand, within MPMX19_05451 at 139.231 kb on - strand, within MPMX19_05451 at 139.231 kb on - strand, within MPMX19_05451 at 139.349 kb on + strand, within MPMX19_05451 at 139.350 kb on - strand, within MPMX19_05451 at 139.406 kb on - strand, within MPMX19_05451 at 139.471 kb on + strand, within MPMX19_05451 at 139.644 kb on + strand, within MPMX19_05451 at 139.705 kb on + strand, within MPMX19_05451 at 139.706 kb on - strand, within MPMX19_05451 at 139.706 kb on - strand, within MPMX19_05451 at 139.763 kb on + strand, within MPMX19_05451 at 139.770 kb on - strand, within MPMX19_05451 at 139.771 kb on + strand, within MPMX19_05451 at 139.772 kb on - strand, within MPMX19_05451 at 139.996 kb on + strand, within MPMX19_05451 at 139.996 kb on + strand, within MPMX19_05451 at 139.997 kb on - strand, within MPMX19_05451 at 140.113 kb on + strand, within MPMX19_05451 at 140.114 kb on - strand, within MPMX19_05451 at 140.152 kb on + strand, within MPMX19_05451 at 140.153 kb on - strand, within MPMX19_05451 at 140.194 kb on + strand, within MPMX19_05451 at 140.196 kb on + strand, within MPMX19_05451 at 140.270 kb on + strand, within MPMX19_05451 at 140.408 kb on + strand at 140.409 kb on - strand at 140.417 kb on + strand at 140.417 kb on + strand at 140.711 kb on + strand at 140.768 kb on + strand at 140.905 kb on + strand at 140.924 kb on + strand at 140.925 kb on - strand at 140.991 kb on + strand at 140.991 kb on + strand at 140.992 kb on - strand at 140.992 kb on - strand at 141.078 kb on - strand at 141.258 kb on + strand at 141.259 kb on - strand at 141.275 kb on + strand at 141.316 kb on + strand at 141.316 kb on + strand at 141.316 kb on + strand at 141.316 kb on + strand at 141.317 kb on - strand at 141.317 kb on - strand at 141.464 kb on - strand, within MPMX19_05452
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 138,165 + -0.4 138,165 + +0.4 138,271 + -0.1 138,317 + -0.4 138,317 + -0.8 138,317 + -1.0 138,318 - +0.1 138,318 - +0.4 138,429 - -0.2 138,433 - -0.1 138,461 - +0.3 138,481 + +0.2 138,517 + -0.8 138,517 + +0.0 138,518 - -2.1 138,518 - -1.7 138,518 - -1.2 138,522 + -0.7 138,555 + +0.0 138,556 - -0.1 138,556 - -0.7 138,556 - -0.5 138,556 - -1.3 138,556 - -0.8 138,638 - +0.6 138,667 + +1.1 138,667 + -0.4 138,668 - -0.7 138,780 - MPMX19_05451 0.14 -1.3 138,780 - MPMX19_05451 0.14 -1.4 138,819 - MPMX19_05451 0.16 -1.8 138,963 - MPMX19_05451 0.23 -0.4 139,002 - MPMX19_05451 0.25 -1.2 139,013 + MPMX19_05451 0.26 -1.8 139,013 + MPMX19_05451 0.26 -1.1 139,015 + MPMX19_05451 0.26 -0.5 139,016 - MPMX19_05451 0.26 -2.8 139,016 - MPMX19_05451 0.26 -1.2 139,201 - MPMX19_05451 0.35 -0.1 139,209 + MPMX19_05451 0.35 +0.5 139,209 + MPMX19_05451 0.35 -0.4 139,211 + MPMX19_05451 0.35 -0.3 139,211 + MPMX19_05451 0.35 -1.2 139,212 - MPMX19_05451 0.35 -1.1 139,212 - MPMX19_05451 0.35 -1.5 139,231 - MPMX19_05451 0.36 +0.6 139,231 - MPMX19_05451 0.36 -0.1 139,349 + MPMX19_05451 0.42 -0.3 139,350 - MPMX19_05451 0.42 -0.1 139,406 - MPMX19_05451 0.44 -0.8 139,471 + MPMX19_05451 0.48 -0.1 139,644 + MPMX19_05451 0.56 -1.3 139,705 + MPMX19_05451 0.59 -2.4 139,706 - MPMX19_05451 0.59 -0.0 139,706 - MPMX19_05451 0.59 +0.5 139,763 + MPMX19_05451 0.62 -0.3 139,770 - MPMX19_05451 0.62 -1.2 139,771 + MPMX19_05451 0.62 -0.3 139,772 - MPMX19_05451 0.62 +0.6 139,996 + MPMX19_05451 0.73 +0.0 139,996 + MPMX19_05451 0.73 +0.8 139,997 - MPMX19_05451 0.73 -0.2 140,113 + MPMX19_05451 0.78 -0.1 140,114 - MPMX19_05451 0.78 +0.3 140,152 + MPMX19_05451 0.80 -0.1 140,153 - MPMX19_05451 0.80 -0.5 140,194 + MPMX19_05451 0.82 -0.3 140,196 + MPMX19_05451 0.82 -1.2 140,270 + MPMX19_05451 0.86 -2.2 140,408 + -1.3 140,409 - +1.0 140,417 + +0.3 140,417 + -0.5 140,711 + -0.6 140,768 + -1.1 140,905 + -1.7 140,924 + +0.5 140,925 - -0.2 140,991 + +0.5 140,991 + +0.7 140,992 - -0.8 140,992 - -2.6 141,078 - -0.9 141,258 + -2.5 141,259 - -1.5 141,275 + -0.1 141,316 + +0.1 141,316 + -0.4 141,316 + -0.5 141,316 + +0.6 141,317 - -0.9 141,317 - -1.7 141,464 - MPMX19_05452 0.36 -1.5
Or see this region's nucleotide sequence