Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05451

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05450 and MPMX19_05451 are separated by 441 nucleotidesMPMX19_05451 and MPMX19_05452 are separated by 744 nucleotides MPMX19_05450: MPMX19_05450 - IS5 family transposase ISAzs10, at 136,964 to 138,040 _05450 MPMX19_05451: MPMX19_05451 - hypothetical protein, at 138,482 to 140,560 _05451 MPMX19_05452: MPMX19_05452 - hypothetical protein, at 141,305 to 141,742 _05452 Position (kb) 138 139 140 141Strain fitness (log2 ratio) -3 -2 -1 0 1at 138.165 kb on + strandat 138.165 kb on + strandat 138.271 kb on + strandat 138.317 kb on + strandat 138.317 kb on + strandat 138.317 kb on + strandat 138.318 kb on - strandat 138.318 kb on - strandat 138.429 kb on - strandat 138.433 kb on - strandat 138.461 kb on - strandat 138.481 kb on + strandat 138.517 kb on + strandat 138.517 kb on + strandat 138.518 kb on - strandat 138.518 kb on - strandat 138.518 kb on - strandat 138.522 kb on + strandat 138.555 kb on + strandat 138.556 kb on - strandat 138.556 kb on - strandat 138.556 kb on - strandat 138.556 kb on - strandat 138.556 kb on - strandat 138.638 kb on - strandat 138.667 kb on + strandat 138.667 kb on + strandat 138.668 kb on - strandat 138.780 kb on - strand, within MPMX19_05451at 138.780 kb on - strand, within MPMX19_05451at 138.819 kb on - strand, within MPMX19_05451at 138.963 kb on - strand, within MPMX19_05451at 139.002 kb on - strand, within MPMX19_05451at 139.013 kb on + strand, within MPMX19_05451at 139.013 kb on + strand, within MPMX19_05451at 139.015 kb on + strand, within MPMX19_05451at 139.016 kb on - strand, within MPMX19_05451at 139.016 kb on - strand, within MPMX19_05451at 139.201 kb on - strand, within MPMX19_05451at 139.209 kb on + strand, within MPMX19_05451at 139.209 kb on + strand, within MPMX19_05451at 139.211 kb on + strand, within MPMX19_05451at 139.211 kb on + strand, within MPMX19_05451at 139.212 kb on - strand, within MPMX19_05451at 139.212 kb on - strand, within MPMX19_05451at 139.231 kb on - strand, within MPMX19_05451at 139.231 kb on - strand, within MPMX19_05451at 139.349 kb on + strand, within MPMX19_05451at 139.350 kb on - strand, within MPMX19_05451at 139.406 kb on - strand, within MPMX19_05451at 139.471 kb on + strand, within MPMX19_05451at 139.644 kb on + strand, within MPMX19_05451at 139.705 kb on + strand, within MPMX19_05451at 139.706 kb on - strand, within MPMX19_05451at 139.706 kb on - strand, within MPMX19_05451at 139.763 kb on + strand, within MPMX19_05451at 139.770 kb on - strand, within MPMX19_05451at 139.771 kb on + strand, within MPMX19_05451at 139.772 kb on - strand, within MPMX19_05451at 139.996 kb on + strand, within MPMX19_05451at 139.996 kb on + strand, within MPMX19_05451at 139.997 kb on - strand, within MPMX19_05451at 140.113 kb on + strand, within MPMX19_05451at 140.114 kb on - strand, within MPMX19_05451at 140.152 kb on + strand, within MPMX19_05451at 140.153 kb on - strand, within MPMX19_05451at 140.194 kb on + strand, within MPMX19_05451at 140.196 kb on + strand, within MPMX19_05451at 140.270 kb on + strand, within MPMX19_05451at 140.408 kb on + strandat 140.409 kb on - strandat 140.417 kb on + strandat 140.417 kb on + strandat 140.711 kb on + strandat 140.768 kb on + strandat 140.905 kb on + strandat 140.924 kb on + strandat 140.925 kb on - strandat 140.991 kb on + strandat 140.991 kb on + strandat 140.992 kb on - strandat 140.992 kb on - strandat 141.078 kb on - strandat 141.258 kb on + strandat 141.259 kb on - strandat 141.275 kb on + strandat 141.316 kb on + strandat 141.316 kb on + strandat 141.316 kb on + strandat 141.316 kb on + strandat 141.317 kb on - strandat 141.317 kb on - strandat 141.464 kb on - strand, within MPMX19_05452

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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138,165 + -0.4
138,165 + +0.4
138,271 + -0.1
138,317 + -0.4
138,317 + -0.8
138,317 + -1.0
138,318 - +0.1
138,318 - +0.4
138,429 - -0.2
138,433 - -0.1
138,461 - +0.3
138,481 + +0.2
138,517 + -0.8
138,517 + +0.0
138,518 - -2.1
138,518 - -1.7
138,518 - -1.2
138,522 + -0.7
138,555 + +0.0
138,556 - -0.1
138,556 - -0.7
138,556 - -0.5
138,556 - -1.3
138,556 - -0.8
138,638 - +0.6
138,667 + +1.1
138,667 + -0.4
138,668 - -0.7
138,780 - MPMX19_05451 0.14 -1.3
138,780 - MPMX19_05451 0.14 -1.4
138,819 - MPMX19_05451 0.16 -1.8
138,963 - MPMX19_05451 0.23 -0.4
139,002 - MPMX19_05451 0.25 -1.2
139,013 + MPMX19_05451 0.26 -1.8
139,013 + MPMX19_05451 0.26 -1.1
139,015 + MPMX19_05451 0.26 -0.5
139,016 - MPMX19_05451 0.26 -2.8
139,016 - MPMX19_05451 0.26 -1.2
139,201 - MPMX19_05451 0.35 -0.1
139,209 + MPMX19_05451 0.35 +0.5
139,209 + MPMX19_05451 0.35 -0.4
139,211 + MPMX19_05451 0.35 -0.3
139,211 + MPMX19_05451 0.35 -1.2
139,212 - MPMX19_05451 0.35 -1.1
139,212 - MPMX19_05451 0.35 -1.5
139,231 - MPMX19_05451 0.36 +0.6
139,231 - MPMX19_05451 0.36 -0.1
139,349 + MPMX19_05451 0.42 -0.3
139,350 - MPMX19_05451 0.42 -0.1
139,406 - MPMX19_05451 0.44 -0.8
139,471 + MPMX19_05451 0.48 -0.1
139,644 + MPMX19_05451 0.56 -1.3
139,705 + MPMX19_05451 0.59 -2.4
139,706 - MPMX19_05451 0.59 -0.0
139,706 - MPMX19_05451 0.59 +0.5
139,763 + MPMX19_05451 0.62 -0.3
139,770 - MPMX19_05451 0.62 -1.2
139,771 + MPMX19_05451 0.62 -0.3
139,772 - MPMX19_05451 0.62 +0.6
139,996 + MPMX19_05451 0.73 +0.0
139,996 + MPMX19_05451 0.73 +0.8
139,997 - MPMX19_05451 0.73 -0.2
140,113 + MPMX19_05451 0.78 -0.1
140,114 - MPMX19_05451 0.78 +0.3
140,152 + MPMX19_05451 0.80 -0.1
140,153 - MPMX19_05451 0.80 -0.5
140,194 + MPMX19_05451 0.82 -0.3
140,196 + MPMX19_05451 0.82 -1.2
140,270 + MPMX19_05451 0.86 -2.2
140,408 + -1.3
140,409 - +1.0
140,417 + +0.3
140,417 + -0.5
140,711 + -0.6
140,768 + -1.1
140,905 + -1.7
140,924 + +0.5
140,925 - -0.2
140,991 + +0.5
140,991 + +0.7
140,992 - -0.8
140,992 - -2.6
141,078 - -0.9
141,258 + -2.5
141,259 - -1.5
141,275 + -0.1
141,316 + +0.1
141,316 + -0.4
141,316 + -0.5
141,316 + +0.6
141,317 - -0.9
141,317 - -1.7
141,464 - MPMX19_05452 0.36 -1.5

Or see this region's nucleotide sequence