Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04685

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04683 and MPMX19_04684 overlap by 4 nucleotidesMPMX19_04684 and MPMX19_04685 are separated by 21 nucleotidesMPMX19_04685 and MPMX19_04686 are separated by 37 nucleotidesMPMX19_04686 and MPMX19_04687 are separated by 42 nucleotides MPMX19_04683: MPMX19_04683 - Acylamidase, at 68,604 to 70,010 _04683 MPMX19_04684: MPMX19_04684 - HTH-type transcriptional repressor RspR, at 70,007 to 70,744 _04684 MPMX19_04685: MPMX19_04685 - D-hydantoinase, at 70,766 to 72,202 _04685 MPMX19_04686: MPMX19_04686 - Maleate isomerase, at 72,240 to 72,986 _04686 MPMX19_04687: MPMX19_04687 - Atrazine chlorohydrolase, at 73,029 to 74,363 _04687 Position (kb) 70 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 70.139 kb on + strand, within MPMX19_04684at 70.139 kb on + strand, within MPMX19_04684at 70.139 kb on + strand, within MPMX19_04684at 70.140 kb on - strand, within MPMX19_04684at 70.140 kb on - strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.562 kb on + strand, within MPMX19_04684at 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.936 kb on - strand, within MPMX19_04685at 70.944 kb on + strand, within MPMX19_04685at 70.944 kb on + strand, within MPMX19_04685at 70.944 kb on + strand, within MPMX19_04685at 70.944 kb on + strand, within MPMX19_04685at 70.945 kb on - strand, within MPMX19_04685at 70.945 kb on - strand, within MPMX19_04685at 70.945 kb on - strand, within MPMX19_04685at 70.945 kb on - strand, within MPMX19_04685at 71.061 kb on + strand, within MPMX19_04685at 71.061 kb on + strand, within MPMX19_04685at 71.061 kb on + strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.062 kb on - strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.401 kb on - strand, within MPMX19_04685at 71.401 kb on - strand, within MPMX19_04685at 71.401 kb on - strand, within MPMX19_04685at 71.421 kb on + strand, within MPMX19_04685at 71.421 kb on + strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.760 kb on + strand, within MPMX19_04685at 71.760 kb on + strand, within MPMX19_04685at 71.761 kb on - strand, within MPMX19_04685at 71.761 kb on - strand, within MPMX19_04685at 71.838 kb on + strand, within MPMX19_04685at 71.838 kb on + strand, within MPMX19_04685at 71.838 kb on + strand, within MPMX19_04685at 71.838 kb on + strand, within MPMX19_04685at 71.839 kb on - strand, within MPMX19_04685at 71.839 kb on - strand, within MPMX19_04685at 71.839 kb on - strand, within MPMX19_04685at 71.839 kb on - strand, within MPMX19_04685at 71.874 kb on + strand, within MPMX19_04685at 71.875 kb on - strand, within MPMX19_04685at 72.343 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.587 kb on - strand, within MPMX19_04686at 72.997 kb on + strandat 72.997 kb on + strandat 72.998 kb on - strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.031 kb on - strandat 73.031 kb on - strandat 73.031 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
70,139 + MPMX19_04684 0.18 +0.2
70,139 + MPMX19_04684 0.18 +0.2
70,139 + MPMX19_04684 0.18 -0.1
70,140 - MPMX19_04684 0.18 -0.7
70,140 - MPMX19_04684 0.18 -0.4
70,149 + MPMX19_04684 0.19 +0.2
70,149 + MPMX19_04684 0.19 -1.4
70,149 + MPMX19_04684 0.19 +0.1
70,149 + MPMX19_04684 0.19 +0.3
70,149 + MPMX19_04684 0.19 +0.8
70,149 + MPMX19_04684 0.19 -1.0
70,149 + MPMX19_04684 0.19 +0.2
70,149 + MPMX19_04684 0.19 +0.6
70,150 - MPMX19_04684 0.19 -0.4
70,150 - MPMX19_04684 0.19 +0.3
70,150 - MPMX19_04684 0.19 -0.2
70,150 - MPMX19_04684 0.19 +0.6
70,150 - MPMX19_04684 0.19 -0.0
70,150 - MPMX19_04684 0.19 +0.3
70,454 + MPMX19_04684 0.61 +0.7
70,454 + MPMX19_04684 0.61 +0.1
70,454 + MPMX19_04684 0.61 +1.2
70,454 + MPMX19_04684 0.61 -1.0
70,454 + MPMX19_04684 0.61 -1.6
70,454 + MPMX19_04684 0.61 -1.4
70,455 - MPMX19_04684 0.61 +0.0
70,455 - MPMX19_04684 0.61 -0.8
70,455 - MPMX19_04684 0.61 +1.2
70,455 - MPMX19_04684 0.61 -1.4
70,455 - MPMX19_04684 0.61 +0.2
70,455 - MPMX19_04684 0.61 -0.6
70,455 - MPMX19_04684 0.61 -1.9
70,562 + MPMX19_04684 0.75 +1.0
70,742 + -0.2
70,742 + +0.9
70,742 + -0.1
70,742 + -0.6
70,742 + +0.3
70,742 + -0.4
70,742 + +0.6
70,742 + +0.0
70,742 + -0.3
70,742 + -0.4
70,743 - -0.4
70,743 - +0.2
70,743 - -0.1
70,743 - -0.5
70,743 - +0.4
70,743 - -0.4
70,743 - -0.8
70,743 - -1.6
70,743 - +1.0
70,743 - +1.1
70,743 - -0.5
70,936 - MPMX19_04685 0.12 -0.8
70,944 + MPMX19_04685 0.12 +0.4
70,944 + MPMX19_04685 0.12 +0.2
70,944 + MPMX19_04685 0.12 -0.4
70,944 + MPMX19_04685 0.12 -1.3
70,945 - MPMX19_04685 0.12 +0.8
70,945 - MPMX19_04685 0.12 +0.4
70,945 - MPMX19_04685 0.12 +0.7
70,945 - MPMX19_04685 0.12 -0.2
71,061 + MPMX19_04685 0.21 -0.6
71,061 + MPMX19_04685 0.21 +0.3
71,061 + MPMX19_04685 0.21 +1.1
71,062 - MPMX19_04685 0.21 +0.2
71,062 - MPMX19_04685 0.21 -1.0
71,062 - MPMX19_04685 0.21 -0.8
71,062 - MPMX19_04685 0.21 -0.8
71,062 - MPMX19_04685 0.21 -0.8
71,062 - MPMX19_04685 0.21 +0.8
71,062 - MPMX19_04685 0.21 -1.5
71,062 - MPMX19_04685 0.21 +0.3
71,062 - MPMX19_04685 0.21 +1.2
71,400 + MPMX19_04685 0.44 -0.5
71,400 + MPMX19_04685 0.44 -0.4
71,400 + MPMX19_04685 0.44 -0.0
71,400 + MPMX19_04685 0.44 -0.2
71,400 + MPMX19_04685 0.44 -1.0
71,400 + MPMX19_04685 0.44 +2.1
71,400 + MPMX19_04685 0.44 -0.4
71,401 - MPMX19_04685 0.44 -0.3
71,401 - MPMX19_04685 0.44 -0.9
71,401 - MPMX19_04685 0.44 -0.0
71,421 + MPMX19_04685 0.46 -0.9
71,421 + MPMX19_04685 0.46 -0.0
71,422 - MPMX19_04685 0.46 +0.3
71,422 - MPMX19_04685 0.46 +0.8
71,422 - MPMX19_04685 0.46 +0.3
71,422 - MPMX19_04685 0.46 +0.2
71,422 - MPMX19_04685 0.46 -0.2
71,422 - MPMX19_04685 0.46 -1.4
71,422 - MPMX19_04685 0.46 +0.3
71,733 + MPMX19_04685 0.67 -0.8
71,733 + MPMX19_04685 0.67 -0.2
71,733 + MPMX19_04685 0.67 +0.2
71,733 + MPMX19_04685 0.67 -0.0
71,733 + MPMX19_04685 0.67 -1.4
71,733 + MPMX19_04685 0.67 -0.4
71,733 + MPMX19_04685 0.67 +0.1
71,733 + MPMX19_04685 0.67 -0.1
71,733 + MPMX19_04685 0.67 -1.1
71,733 + MPMX19_04685 0.67 +0.3
71,733 + MPMX19_04685 0.67 -0.6
71,733 + MPMX19_04685 0.67 +1.3
71,733 + MPMX19_04685 0.67 +0.3
71,733 + MPMX19_04685 0.67 +0.8
71,733 + MPMX19_04685 0.67 -0.4
71,733 + MPMX19_04685 0.67 +1.0
71,733 + MPMX19_04685 0.67 +1.6
71,733 + MPMX19_04685 0.67 +1.0
71,734 - MPMX19_04685 0.67 +0.2
71,734 - MPMX19_04685 0.67 +0.2
71,734 - MPMX19_04685 0.67 +0.6
71,734 - MPMX19_04685 0.67 +0.9
71,734 - MPMX19_04685 0.67 -0.8
71,734 - MPMX19_04685 0.67 +0.4
71,734 - MPMX19_04685 0.67 +0.9
71,742 + MPMX19_04685 0.68 +0.8
71,742 + MPMX19_04685 0.68 +0.1
71,742 + MPMX19_04685 0.68 +0.1
71,742 + MPMX19_04685 0.68 -0.8
71,742 + MPMX19_04685 0.68 -0.3
71,742 + MPMX19_04685 0.68 -0.1
71,742 + MPMX19_04685 0.68 +0.6
71,742 + MPMX19_04685 0.68 +0.1
71,743 - MPMX19_04685 0.68 +0.7
71,743 - MPMX19_04685 0.68 -0.2
71,743 - MPMX19_04685 0.68 -1.0
71,743 - MPMX19_04685 0.68 -0.8
71,743 - MPMX19_04685 0.68 -1.1
71,743 - MPMX19_04685 0.68 -0.3
71,743 - MPMX19_04685 0.68 +0.6
71,743 - MPMX19_04685 0.68 -1.0
71,743 - MPMX19_04685 0.68 +0.2
71,760 + MPMX19_04685 0.69 -0.4
71,760 + MPMX19_04685 0.69 +0.2
71,761 - MPMX19_04685 0.69 -1.9
71,761 - MPMX19_04685 0.69 -2.3
71,838 + MPMX19_04685 0.75 -1.2
71,838 + MPMX19_04685 0.75 +0.2
71,838 + MPMX19_04685 0.75 -0.6
71,838 + MPMX19_04685 0.75 -0.0
71,839 - MPMX19_04685 0.75 -0.2
71,839 - MPMX19_04685 0.75 -0.8
71,839 - MPMX19_04685 0.75 +0.4
71,839 - MPMX19_04685 0.75 +1.0
71,874 + MPMX19_04685 0.77 -0.1
71,875 - MPMX19_04685 0.77 -0.5
72,343 + MPMX19_04686 0.14 +0.1
72,550 + MPMX19_04686 0.41 -0.1
72,550 + MPMX19_04686 0.41 +0.6
72,550 + MPMX19_04686 0.41 -0.8
72,550 + MPMX19_04686 0.41 -0.1
72,550 + MPMX19_04686 0.41 +0.0
72,550 + MPMX19_04686 0.41 -0.8
72,550 + MPMX19_04686 0.41 +0.1
72,550 + MPMX19_04686 0.41 -0.8
72,551 - MPMX19_04686 0.42 -0.0
72,551 - MPMX19_04686 0.42 +0.8
72,551 - MPMX19_04686 0.42 -1.2
72,551 - MPMX19_04686 0.42 -0.8
72,551 - MPMX19_04686 0.42 -0.1
72,551 - MPMX19_04686 0.42 -0.2
72,551 - MPMX19_04686 0.42 +0.8
72,551 - MPMX19_04686 0.42 +0.6
72,551 - MPMX19_04686 0.42 +1.8
72,586 + MPMX19_04686 0.46 +2.0
72,586 + MPMX19_04686 0.46 +0.4
72,586 + MPMX19_04686 0.46 -0.4
72,586 + MPMX19_04686 0.46 -0.3
72,587 - MPMX19_04686 0.46 +0.0
72,997 + -1.0
72,997 + -0.1
72,998 - +1.0
73,030 + +0.1
73,030 + -1.9
73,030 + -1.6
73,030 + +0.2
73,031 - -0.0
73,031 - -0.8
73,031 - -0.2

Or see this region's nucleotide sequence