Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04163

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04162 and MPMX19_04163 are separated by 6 nucleotidesMPMX19_04163 and MPMX19_04164 are separated by 4 nucleotides MPMX19_04162: MPMX19_04162 - Transcription-repair-coupling factor, at 479,169 to 482,582 _04162 MPMX19_04163: MPMX19_04163 - hypothetical protein, at 482,589 to 483,812 _04163 MPMX19_04164: MPMX19_04164 - hypothetical protein, at 483,817 to 485,376 _04164 Position (kb) 482 483 484Strain fitness (log2 ratio) -2 -1 0 1 2at 481.730 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.878 kb on + strand, within MPMX19_04162at 481.878 kb on + strand, within MPMX19_04162at 481.878 kb on + strand, within MPMX19_04162at 481.878 kb on + strand, within MPMX19_04162at 481.879 kb on - strand, within MPMX19_04162at 481.879 kb on - strand, within MPMX19_04162at 482.064 kb on + strand, within MPMX19_04162at 482.064 kb on + strand, within MPMX19_04162at 482.064 kb on + strand, within MPMX19_04162at 482.065 kb on - strand, within MPMX19_04162at 482.065 kb on - strand, within MPMX19_04162at 482.065 kb on - strand, within MPMX19_04162at 482.065 kb on - strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.580 kb on + strandat 482.580 kb on + strandat 482.580 kb on + strandat 482.580 kb on + strandat 482.580 kb on + strandat 482.581 kb on - strandat 482.581 kb on - strandat 482.581 kb on - strandat 482.581 kb on - strandat 482.581 kb on - strandat 482.581 kb on - strandat 483.244 kb on + strand, within MPMX19_04163at 483.244 kb on + strand, within MPMX19_04163at 483.244 kb on + strand, within MPMX19_04163at 483.244 kb on + strand, within MPMX19_04163at 483.244 kb on + strand, within MPMX19_04163at 483.245 kb on - strand, within MPMX19_04163at 483.245 kb on - strand, within MPMX19_04163at 483.307 kb on + strand, within MPMX19_04163at 483.307 kb on + strand, within MPMX19_04163at 483.308 kb on - strand, within MPMX19_04163at 483.308 kb on - strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.616 kb on + strand, within MPMX19_04163at 483.616 kb on + strand, within MPMX19_04163at 483.616 kb on + strand, within MPMX19_04163at 483.616 kb on + strand, within MPMX19_04163at 483.616 kb on + strand, within MPMX19_04163at 483.616 kb on + strand, within MPMX19_04163at 483.616 kb on + strand, within MPMX19_04163at 483.616 kb on + strand, within MPMX19_04163at 483.617 kb on - strand, within MPMX19_04163at 483.617 kb on - strand, within MPMX19_04163at 483.617 kb on - strand, within MPMX19_04163at 483.617 kb on - strand, within MPMX19_04163at 483.617 kb on - strand, within MPMX19_04163at 483.617 kb on - strand, within MPMX19_04163at 483.617 kb on - strand, within MPMX19_04163at 483.819 kb on - strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.857 kb on + strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 483.858 kb on - strandat 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.763 kb on + strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.764 kb on - strand, within MPMX19_04164at 484.766 kb on + strand, within MPMX19_04164at 484.766 kb on + strand, within MPMX19_04164at 484.766 kb on + strand, within MPMX19_04164at 484.766 kb on + strand, within MPMX19_04164at 484.766 kb on + strand, within MPMX19_04164at 484.766 kb on + strand, within MPMX19_04164at 484.767 kb on - strand, within MPMX19_04164at 484.767 kb on - strand, within MPMX19_04164

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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481,730 + MPMX19_04162 0.75 -0.8
481,872 + MPMX19_04162 0.79 -1.8
481,872 + MPMX19_04162 0.79 -1.4
481,872 + MPMX19_04162 0.79 -0.8
481,872 + MPMX19_04162 0.79 -0.5
481,872 + MPMX19_04162 0.79 +0.0
481,872 + MPMX19_04162 0.79 -0.2
481,872 + MPMX19_04162 0.79 +0.7
481,872 + MPMX19_04162 0.79 +0.8
481,873 - MPMX19_04162 0.79 -0.5
481,873 - MPMX19_04162 0.79 +0.7
481,873 - MPMX19_04162 0.79 +0.8
481,873 - MPMX19_04162 0.79 +0.0
481,873 - MPMX19_04162 0.79 -0.2
481,873 - MPMX19_04162 0.79 -1.6
481,873 - MPMX19_04162 0.79 +1.6
481,873 - MPMX19_04162 0.79 +1.3
481,873 - MPMX19_04162 0.79 +0.3
481,873 - MPMX19_04162 0.79 -2.1
481,878 + MPMX19_04162 0.79 -1.1
481,878 + MPMX19_04162 0.79 -0.5
481,878 + MPMX19_04162 0.79 -0.7
481,878 + MPMX19_04162 0.79 +0.1
481,879 - MPMX19_04162 0.79 -0.9
481,879 - MPMX19_04162 0.79 -0.6
482,064 + MPMX19_04162 0.85 -0.3
482,064 + MPMX19_04162 0.85 +0.3
482,064 + MPMX19_04162 0.85 -0.8
482,065 - MPMX19_04162 0.85 -0.3
482,065 - MPMX19_04162 0.85 +1.2
482,065 - MPMX19_04162 0.85 -1.2
482,065 - MPMX19_04162 0.85 -1.1
482,169 + MPMX19_04162 0.88 -0.5
482,169 + MPMX19_04162 0.88 -0.5
482,169 + MPMX19_04162 0.88 +0.0
482,169 + MPMX19_04162 0.88 -0.8
482,169 + MPMX19_04162 0.88 -0.7
482,169 + MPMX19_04162 0.88 +0.3
482,169 + MPMX19_04162 0.88 +0.3
482,169 + MPMX19_04162 0.88 -1.6
482,169 + MPMX19_04162 0.88 -1.3
482,169 + MPMX19_04162 0.88 -0.7
482,169 + MPMX19_04162 0.88 -1.7
482,169 + MPMX19_04162 0.88 -1.1
482,170 - MPMX19_04162 0.88 -0.3
482,170 - MPMX19_04162 0.88 -1.0
482,170 - MPMX19_04162 0.88 +0.4
482,170 - MPMX19_04162 0.88 -0.4
482,170 - MPMX19_04162 0.88 -0.7
482,170 - MPMX19_04162 0.88 +0.1
482,170 - MPMX19_04162 0.88 +0.4
482,170 - MPMX19_04162 0.88 +0.5
482,170 - MPMX19_04162 0.88 -0.5
482,170 - MPMX19_04162 0.88 -0.5
482,170 - MPMX19_04162 0.88 -0.4
482,580 + +1.2
482,580 + +0.6
482,580 + -0.2
482,580 + -0.7
482,580 + -0.2
482,581 - +0.6
482,581 - -0.4
482,581 - +0.4
482,581 - -0.7
482,581 - -0.4
482,581 - +0.5
483,244 + MPMX19_04163 0.54 -0.2
483,244 + MPMX19_04163 0.54 +0.6
483,244 + MPMX19_04163 0.54 -0.7
483,244 + MPMX19_04163 0.54 -1.4
483,244 + MPMX19_04163 0.54 -0.4
483,245 - MPMX19_04163 0.54 -0.3
483,245 - MPMX19_04163 0.54 -0.4
483,307 + MPMX19_04163 0.59 -1.8
483,307 + MPMX19_04163 0.59 -0.2
483,308 - MPMX19_04163 0.59 +1.0
483,308 - MPMX19_04163 0.59 +0.4
483,355 + MPMX19_04163 0.63 +0.1
483,355 + MPMX19_04163 0.63 -0.8
483,355 + MPMX19_04163 0.63 -1.1
483,355 + MPMX19_04163 0.63 +1.6
483,355 + MPMX19_04163 0.63 -0.4
483,355 + MPMX19_04163 0.63 -0.4
483,355 + MPMX19_04163 0.63 -0.4
483,355 + MPMX19_04163 0.63 -1.7
483,355 + MPMX19_04163 0.63 -1.1
483,355 + MPMX19_04163 0.63 +0.0
483,355 + MPMX19_04163 0.63 -1.6
483,355 + MPMX19_04163 0.63 -0.5
483,356 - MPMX19_04163 0.63 -0.8
483,356 - MPMX19_04163 0.63 -1.4
483,356 - MPMX19_04163 0.63 -0.4
483,356 - MPMX19_04163 0.63 +0.2
483,356 - MPMX19_04163 0.63 -1.0
483,356 - MPMX19_04163 0.63 -1.8
483,356 - MPMX19_04163 0.63 -0.5
483,356 - MPMX19_04163 0.63 -1.7
483,356 - MPMX19_04163 0.63 +0.1
483,616 + MPMX19_04163 0.84 -1.6
483,616 + MPMX19_04163 0.84 +1.0
483,616 + MPMX19_04163 0.84 +0.9
483,616 + MPMX19_04163 0.84 -0.9
483,616 + MPMX19_04163 0.84 +0.6
483,616 + MPMX19_04163 0.84 -0.4
483,616 + MPMX19_04163 0.84 -0.4
483,616 + MPMX19_04163 0.84 -2.0
483,617 - MPMX19_04163 0.84 -1.1
483,617 - MPMX19_04163 0.84 -1.0
483,617 - MPMX19_04163 0.84 -0.0
483,617 - MPMX19_04163 0.84 -0.7
483,617 - MPMX19_04163 0.84 -2.1
483,617 - MPMX19_04163 0.84 -0.2
483,617 - MPMX19_04163 0.84 -1.1
483,819 - +0.5
483,857 + -0.8
483,857 + -0.1
483,857 + -0.6
483,857 + -0.6
483,857 + +0.2
483,857 + +1.6
483,857 + -0.5
483,857 + -0.3
483,857 + -1.1
483,857 + -1.0
483,857 + -0.8
483,857 + +1.1
483,857 + -1.6
483,857 + +0.0
483,857 + -1.5
483,857 + -0.4
483,857 + +1.3
483,857 + +0.8
483,858 - +0.0
483,858 - +0.4
483,858 - -1.7
483,858 - +0.4
483,858 - -1.6
483,858 - -0.8
483,858 - +0.8
483,858 - +0.0
483,858 - +0.0
483,858 - -0.6
483,858 - +0.1
483,858 - -0.6
483,858 - +0.8
483,858 - -0.6
483,858 - -0.4
483,858 - +0.3
483,858 - -1.1
483,858 - -0.9
483,858 - -0.9
484,763 + MPMX19_04164 0.61 +0.5
484,763 + MPMX19_04164 0.61 +0.6
484,763 + MPMX19_04164 0.61 -0.1
484,763 + MPMX19_04164 0.61 -1.0
484,763 + MPMX19_04164 0.61 -0.3
484,763 + MPMX19_04164 0.61 -1.0
484,763 + MPMX19_04164 0.61 -0.5
484,763 + MPMX19_04164 0.61 +0.2
484,763 + MPMX19_04164 0.61 +0.0
484,763 + MPMX19_04164 0.61 -1.2
484,763 + MPMX19_04164 0.61 -1.3
484,763 + MPMX19_04164 0.61 -0.1
484,763 + MPMX19_04164 0.61 +2.6
484,763 + MPMX19_04164 0.61 -0.8
484,763 + MPMX19_04164 0.61 -1.1
484,763 + MPMX19_04164 0.61 -0.3
484,763 + MPMX19_04164 0.61 -1.3
484,763 + MPMX19_04164 0.61 +0.1
484,763 + MPMX19_04164 0.61 +0.6
484,764 - MPMX19_04164 0.61 -0.6
484,764 - MPMX19_04164 0.61 -0.3
484,764 - MPMX19_04164 0.61 +1.1
484,764 - MPMX19_04164 0.61 -0.1
484,764 - MPMX19_04164 0.61 -0.9
484,764 - MPMX19_04164 0.61 -0.9
484,764 - MPMX19_04164 0.61 -1.2
484,764 - MPMX19_04164 0.61 -0.3
484,764 - MPMX19_04164 0.61 -0.2
484,764 - MPMX19_04164 0.61 -0.4
484,764 - MPMX19_04164 0.61 -0.2
484,764 - MPMX19_04164 0.61 -1.3
484,764 - MPMX19_04164 0.61 +0.9
484,764 - MPMX19_04164 0.61 -2.0
484,766 + MPMX19_04164 0.61 +0.9
484,766 + MPMX19_04164 0.61 -0.8
484,766 + MPMX19_04164 0.61 +0.0
484,766 + MPMX19_04164 0.61 -0.2
484,766 + MPMX19_04164 0.61 -1.2
484,766 + MPMX19_04164 0.61 -0.6
484,767 - MPMX19_04164 0.61 +0.4
484,767 - MPMX19_04164 0.61 -0.2

Or see this region's nucleotide sequence