Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03649

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03648 and MPMX19_03649 are separated by 221 nucleotidesMPMX19_03649 and MPMX19_03650 are separated by 2 nucleotidesMPMX19_03650 and MPMX19_03651 are separated by 13 nucleotides MPMX19_03648: MPMX19_03648 - hypothetical protein, at 1,085,829 to 1,087,139 _03648 MPMX19_03649: MPMX19_03649 - Trehalose transport system permease protein SugA, at 1,087,361 to 1,088,233 _03649 MPMX19_03650: MPMX19_03650 - Diacetylchitobiose uptake system permease protein NgcG, at 1,088,236 to 1,089,066 _03650 MPMX19_03651: MPMX19_03651 - Maltose/maltodextrin import ATP-binding protein MalK, at 1,089,080 to 1,090,108 _03651 Position (kb) 1087 1088 1089Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.504 kb on + strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.505 kb on - strand, within MPMX19_03648at 1086.804 kb on + strand, within MPMX19_03648at 1086.804 kb on + strand, within MPMX19_03648at 1086.804 kb on + strand, within MPMX19_03648at 1086.804 kb on + strand, within MPMX19_03648at 1086.804 kb on + strand, within MPMX19_03648at 1086.804 kb on + strand, within MPMX19_03648at 1086.804 kb on + strand, within MPMX19_03648at 1086.805 kb on - strand, within MPMX19_03648at 1086.805 kb on - strand, within MPMX19_03648at 1086.805 kb on - strand, within MPMX19_03648at 1086.805 kb on - strand, within MPMX19_03648at 1086.805 kb on - strand, within MPMX19_03648at 1086.805 kb on - strand, within MPMX19_03648at 1086.870 kb on + strand, within MPMX19_03648at 1086.870 kb on + strand, within MPMX19_03648at 1086.870 kb on + strand, within MPMX19_03648at 1086.870 kb on + strand, within MPMX19_03648at 1086.871 kb on - strand, within MPMX19_03648at 1086.871 kb on - strand, within MPMX19_03648at 1086.886 kb on - strand, within MPMX19_03648at 1086.886 kb on - strand, within MPMX19_03648at 1086.972 kb on + strand, within MPMX19_03648at 1086.972 kb on + strand, within MPMX19_03648at 1086.972 kb on + strand, within MPMX19_03648at 1086.973 kb on - strand, within MPMX19_03648at 1086.973 kb on - strand, within MPMX19_03648at 1086.973 kb on - strand, within MPMX19_03648at 1086.973 kb on - strand, within MPMX19_03648at 1086.973 kb on - strand, within MPMX19_03648at 1086.973 kb on - strand, within MPMX19_03648at 1087.128 kb on + strandat 1087.129 kb on - strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.137 kb on + strandat 1087.138 kb on - strandat 1087.138 kb on - strandat 1087.138 kb on - strandat 1087.138 kb on - strandat 1087.138 kb on - strandat 1087.138 kb on - strandat 1087.175 kb on + strandat 1087.175 kb on + strandat 1087.175 kb on + strandat 1087.175 kb on + strandat 1087.175 kb on + strandat 1087.176 kb on - strandat 1087.176 kb on - strandat 1087.176 kb on - strandat 1087.176 kb on - strandat 1087.176 kb on - strandat 1087.305 kb on + strandat 1087.305 kb on + strandat 1087.305 kb on + strandat 1087.306 kb on - strandat 1087.306 kb on - strandat 1087.306 kb on - strandat 1087.306 kb on - strandat 1087.306 kb on - strandat 1087.309 kb on + strandat 1087.309 kb on + strandat 1087.309 kb on + strandat 1087.309 kb on + strandat 1087.310 kb on - strandat 1087.460 kb on + strand, within MPMX19_03649at 1087.460 kb on + strand, within MPMX19_03649at 1087.460 kb on + strand, within MPMX19_03649at 1087.460 kb on + strand, within MPMX19_03649at 1087.460 kb on + strand, within MPMX19_03649at 1087.460 kb on + strand, within MPMX19_03649at 1087.460 kb on + strand, within MPMX19_03649at 1087.460 kb on + strand, within MPMX19_03649at 1087.461 kb on - strand, within MPMX19_03649at 1087.461 kb on - strand, within MPMX19_03649at 1087.461 kb on - strand, within MPMX19_03649at 1087.461 kb on - strand, within MPMX19_03649at 1087.461 kb on - strand, within MPMX19_03649at 1087.478 kb on + strand, within MPMX19_03649at 1087.478 kb on + strand, within MPMX19_03649at 1087.478 kb on + strand, within MPMX19_03649at 1087.478 kb on + strand, within MPMX19_03649at 1087.479 kb on - strand, within MPMX19_03649at 1087.526 kb on + strand, within MPMX19_03649at 1087.526 kb on + strand, within MPMX19_03649at 1087.526 kb on + strand, within MPMX19_03649at 1087.527 kb on - strand, within MPMX19_03649at 1087.527 kb on - strand, within MPMX19_03649at 1087.527 kb on - strand, within MPMX19_03649at 1087.527 kb on - strand, within MPMX19_03649at 1087.527 kb on - strand, within MPMX19_03649at 1087.530 kb on + strand, within MPMX19_03649at 1087.532 kb on + strand, within MPMX19_03649at 1087.532 kb on + strand, within MPMX19_03649at 1087.532 kb on + strand, within MPMX19_03649at 1087.533 kb on - strand, within MPMX19_03649at 1087.533 kb on - strand, within MPMX19_03649at 1087.533 kb on - strand, within MPMX19_03649at 1088.099 kb on + strand, within MPMX19_03649at 1088.099 kb on + strand, within MPMX19_03649at 1088.099 kb on + strand, within MPMX19_03649at 1088.099 kb on + strand, within MPMX19_03649at 1088.099 kb on + strand, within MPMX19_03649at 1088.100 kb on - strand, within MPMX19_03649at 1088.100 kb on - strand, within MPMX19_03649at 1088.100 kb on - strand, within MPMX19_03649at 1088.100 kb on - strand, within MPMX19_03649at 1088.108 kb on + strand, within MPMX19_03649at 1088.108 kb on + strand, within MPMX19_03649at 1088.108 kb on + strand, within MPMX19_03649at 1088.109 kb on - strand, within MPMX19_03649at 1088.109 kb on - strand, within MPMX19_03649at 1088.109 kb on - strand, within MPMX19_03649at 1088.109 kb on - strand, within MPMX19_03649at 1088.410 kb on + strand, within MPMX19_03650at 1088.410 kb on + strand, within MPMX19_03650at 1088.410 kb on + strand, within MPMX19_03650at 1088.410 kb on + strand, within MPMX19_03650at 1088.410 kb on + strand, within MPMX19_03650at 1088.410 kb on + strand, within MPMX19_03650at 1088.410 kb on + strand, within MPMX19_03650at 1088.410 kb on + strand, within MPMX19_03650at 1088.410 kb on + strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.411 kb on - strand, within MPMX19_03650at 1088.437 kb on + strand, within MPMX19_03650at 1088.437 kb on + strand, within MPMX19_03650at 1088.437 kb on + strand, within MPMX19_03650at 1088.437 kb on + strand, within MPMX19_03650at 1088.437 kb on + strand, within MPMX19_03650at 1088.438 kb on - strand, within MPMX19_03650at 1088.438 kb on - strand, within MPMX19_03650at 1088.617 kb on + strand, within MPMX19_03650at 1088.617 kb on + strand, within MPMX19_03650at 1088.618 kb on - strand, within MPMX19_03650at 1088.618 kb on - strand, within MPMX19_03650at 1088.618 kb on - strand, within MPMX19_03650at 1088.618 kb on - strand, within MPMX19_03650at 1088.618 kb on - strand, within MPMX19_03650at 1088.719 kb on + strand, within MPMX19_03650at 1088.719 kb on + strand, within MPMX19_03650at 1088.719 kb on + strand, within MPMX19_03650at 1088.720 kb on - strand, within MPMX19_03650at 1088.720 kb on - strand, within MPMX19_03650at 1088.720 kb on - strand, within MPMX19_03650at 1088.720 kb on - strand, within MPMX19_03650at 1088.720 kb on - strand, within MPMX19_03650at 1088.720 kb on - strand, within MPMX19_03650at 1088.720 kb on - strand, within MPMX19_03650at 1088.932 kb on + strand, within MPMX19_03650at 1088.932 kb on + strand, within MPMX19_03650at 1088.932 kb on + strand, within MPMX19_03650at 1088.932 kb on + strand, within MPMX19_03650at 1088.932 kb on + strand, within MPMX19_03650at 1088.932 kb on + strand, within MPMX19_03650at 1088.932 kb on + strand, within MPMX19_03650at 1088.933 kb on - strand, within MPMX19_03650at 1088.933 kb on - strand, within MPMX19_03650at 1088.933 kb on - strand, within MPMX19_03650at 1088.933 kb on - strand, within MPMX19_03650at 1088.933 kb on - strand, within MPMX19_03650at 1088.956 kb on + strand, within MPMX19_03650at 1088.956 kb on + strand, within MPMX19_03650at 1088.956 kb on + strand, within MPMX19_03650at 1088.957 kb on - strand, within MPMX19_03650at 1088.957 kb on - strand, within MPMX19_03650at 1089.065 kb on - strandat 1089.065 kb on - strandat 1089.065 kb on - strandat 1089.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,086,504 + MPMX19_03648 0.51 -0.2
1,086,504 + MPMX19_03648 0.51 -1.3
1,086,504 + MPMX19_03648 0.51 -1.7
1,086,504 + MPMX19_03648 0.51 -0.9
1,086,504 + MPMX19_03648 0.51 -0.7
1,086,504 + MPMX19_03648 0.51 +0.0
1,086,504 + MPMX19_03648 0.51 +0.0
1,086,504 + MPMX19_03648 0.51 -1.7
1,086,504 + MPMX19_03648 0.51 -1.9
1,086,504 + MPMX19_03648 0.51 +0.1
1,086,504 + MPMX19_03648 0.51 +0.4
1,086,504 + MPMX19_03648 0.51 -1.7
1,086,504 + MPMX19_03648 0.51 +0.3
1,086,504 + MPMX19_03648 0.51 -2.5
1,086,505 - MPMX19_03648 0.52 -0.6
1,086,505 - MPMX19_03648 0.52 +0.6
1,086,505 - MPMX19_03648 0.52 -0.7
1,086,505 - MPMX19_03648 0.52 -0.4
1,086,505 - MPMX19_03648 0.52 -2.1
1,086,505 - MPMX19_03648 0.52 -0.2
1,086,505 - MPMX19_03648 0.52 -0.9
1,086,505 - MPMX19_03648 0.52 -0.9
1,086,505 - MPMX19_03648 0.52 -0.6
1,086,804 + MPMX19_03648 0.74 -0.4
1,086,804 + MPMX19_03648 0.74 -0.4
1,086,804 + MPMX19_03648 0.74 -0.2
1,086,804 + MPMX19_03648 0.74 -0.3
1,086,804 + MPMX19_03648 0.74 -0.6
1,086,804 + MPMX19_03648 0.74 -0.4
1,086,804 + MPMX19_03648 0.74 -0.4
1,086,805 - MPMX19_03648 0.74 +0.4
1,086,805 - MPMX19_03648 0.74 -0.5
1,086,805 - MPMX19_03648 0.74 -2.2
1,086,805 - MPMX19_03648 0.74 +0.4
1,086,805 - MPMX19_03648 0.74 -1.4
1,086,805 - MPMX19_03648 0.74 -1.9
1,086,870 + MPMX19_03648 0.79 -1.6
1,086,870 + MPMX19_03648 0.79 -1.8
1,086,870 + MPMX19_03648 0.79 -2.1
1,086,870 + MPMX19_03648 0.79 -1.2
1,086,871 - MPMX19_03648 0.79 -1.7
1,086,871 - MPMX19_03648 0.79 -0.8
1,086,886 - MPMX19_03648 0.81 -2.2
1,086,886 - MPMX19_03648 0.81 -1.9
1,086,972 + MPMX19_03648 0.87 +0.5
1,086,972 + MPMX19_03648 0.87 -1.6
1,086,972 + MPMX19_03648 0.87 -0.4
1,086,973 - MPMX19_03648 0.87 +0.2
1,086,973 - MPMX19_03648 0.87 -1.7
1,086,973 - MPMX19_03648 0.87 -2.0
1,086,973 - MPMX19_03648 0.87 +1.3
1,086,973 - MPMX19_03648 0.87 +0.0
1,086,973 - MPMX19_03648 0.87 -0.2
1,087,128 + -2.0
1,087,129 - -0.7
1,087,137 + -1.0
1,087,137 + -1.8
1,087,137 + +0.6
1,087,137 + -1.1
1,087,137 + -1.1
1,087,137 + -0.5
1,087,137 + +0.3
1,087,137 + -0.6
1,087,137 + -1.2
1,087,137 + -1.4
1,087,137 + +0.9
1,087,138 - -0.5
1,087,138 - -1.2
1,087,138 - -2.3
1,087,138 - -0.3
1,087,138 - -1.0
1,087,138 - -0.9
1,087,175 + +0.2
1,087,175 + +0.3
1,087,175 + +1.2
1,087,175 + -1.1
1,087,175 + -1.1
1,087,176 - -1.4
1,087,176 - -0.7
1,087,176 - -0.1
1,087,176 - -1.2
1,087,176 - -0.9
1,087,305 + -0.0
1,087,305 + -0.7
1,087,305 + -1.7
1,087,306 - -1.2
1,087,306 - -1.7
1,087,306 - -0.4
1,087,306 - -1.7
1,087,306 - -1.8
1,087,309 + +0.1
1,087,309 + +0.0
1,087,309 + -0.9
1,087,309 + +2.0
1,087,310 - -0.6
1,087,460 + MPMX19_03649 0.11 -1.9
1,087,460 + MPMX19_03649 0.11 -2.1
1,087,460 + MPMX19_03649 0.11 -2.4
1,087,460 + MPMX19_03649 0.11 -1.6
1,087,460 + MPMX19_03649 0.11 -1.2
1,087,460 + MPMX19_03649 0.11 -0.1
1,087,460 + MPMX19_03649 0.11 -1.1
1,087,460 + MPMX19_03649 0.11 -0.5
1,087,461 - MPMX19_03649 0.11 -0.9
1,087,461 - MPMX19_03649 0.11 -1.7
1,087,461 - MPMX19_03649 0.11 -0.8
1,087,461 - MPMX19_03649 0.11 -2.2
1,087,461 - MPMX19_03649 0.11 -2.2
1,087,478 + MPMX19_03649 0.13 -0.6
1,087,478 + MPMX19_03649 0.13 -1.6
1,087,478 + MPMX19_03649 0.13 +0.3
1,087,478 + MPMX19_03649 0.13 -1.9
1,087,479 - MPMX19_03649 0.14 -0.4
1,087,526 + MPMX19_03649 0.19 -1.2
1,087,526 + MPMX19_03649 0.19 +0.6
1,087,526 + MPMX19_03649 0.19 -2.2
1,087,527 - MPMX19_03649 0.19 -1.1
1,087,527 - MPMX19_03649 0.19 -1.4
1,087,527 - MPMX19_03649 0.19 -0.4
1,087,527 - MPMX19_03649 0.19 +0.0
1,087,527 - MPMX19_03649 0.19 -2.6
1,087,530 + MPMX19_03649 0.19 +0.0
1,087,532 + MPMX19_03649 0.20 -0.6
1,087,532 + MPMX19_03649 0.20 -1.2
1,087,532 + MPMX19_03649 0.20 +0.4
1,087,533 - MPMX19_03649 0.20 -1.5
1,087,533 - MPMX19_03649 0.20 -1.1
1,087,533 - MPMX19_03649 0.20 -0.2
1,088,099 + MPMX19_03649 0.85 +1.0
1,088,099 + MPMX19_03649 0.85 +1.2
1,088,099 + MPMX19_03649 0.85 -1.9
1,088,099 + MPMX19_03649 0.85 -1.1
1,088,099 + MPMX19_03649 0.85 -1.3
1,088,100 - MPMX19_03649 0.85 -1.3
1,088,100 - MPMX19_03649 0.85 -0.5
1,088,100 - MPMX19_03649 0.85 -0.3
1,088,100 - MPMX19_03649 0.85 -1.9
1,088,108 + MPMX19_03649 0.86 +0.6
1,088,108 + MPMX19_03649 0.86 +1.0
1,088,108 + MPMX19_03649 0.86 -0.7
1,088,109 - MPMX19_03649 0.86 -1.5
1,088,109 - MPMX19_03649 0.86 -0.1
1,088,109 - MPMX19_03649 0.86 -0.9
1,088,109 - MPMX19_03649 0.86 -1.9
1,088,410 + MPMX19_03650 0.21 -2.3
1,088,410 + MPMX19_03650 0.21 +0.1
1,088,410 + MPMX19_03650 0.21 +0.6
1,088,410 + MPMX19_03650 0.21 -1.2
1,088,410 + MPMX19_03650 0.21 -0.7
1,088,410 + MPMX19_03650 0.21 -0.8
1,088,410 + MPMX19_03650 0.21 -0.1
1,088,410 + MPMX19_03650 0.21 +0.8
1,088,410 + MPMX19_03650 0.21 -1.2
1,088,411 - MPMX19_03650 0.21 -2.0
1,088,411 - MPMX19_03650 0.21 -1.9
1,088,411 - MPMX19_03650 0.21 -1.6
1,088,411 - MPMX19_03650 0.21 -1.4
1,088,411 - MPMX19_03650 0.21 +0.3
1,088,411 - MPMX19_03650 0.21 -1.6
1,088,411 - MPMX19_03650 0.21 -1.1
1,088,411 - MPMX19_03650 0.21 -0.9
1,088,411 - MPMX19_03650 0.21 -0.4
1,088,411 - MPMX19_03650 0.21 -1.3
1,088,411 - MPMX19_03650 0.21 -2.4
1,088,411 - MPMX19_03650 0.21 -0.8
1,088,411 - MPMX19_03650 0.21 -1.7
1,088,411 - MPMX19_03650 0.21 -2.1
1,088,437 + MPMX19_03650 0.24 -1.5
1,088,437 + MPMX19_03650 0.24 -1.8
1,088,437 + MPMX19_03650 0.24 +0.4
1,088,437 + MPMX19_03650 0.24 -3.1
1,088,437 + MPMX19_03650 0.24 -0.7
1,088,438 - MPMX19_03650 0.24 -0.6
1,088,438 - MPMX19_03650 0.24 -1.0
1,088,617 + MPMX19_03650 0.46 -0.3
1,088,617 + MPMX19_03650 0.46 -0.6
1,088,618 - MPMX19_03650 0.46 -0.7
1,088,618 - MPMX19_03650 0.46 -0.6
1,088,618 - MPMX19_03650 0.46 -0.0
1,088,618 - MPMX19_03650 0.46 -0.2
1,088,618 - MPMX19_03650 0.46 -0.4
1,088,719 + MPMX19_03650 0.58 -2.3
1,088,719 + MPMX19_03650 0.58 -0.4
1,088,719 + MPMX19_03650 0.58 -1.3
1,088,720 - MPMX19_03650 0.58 -3.2
1,088,720 - MPMX19_03650 0.58 -1.1
1,088,720 - MPMX19_03650 0.58 -1.0
1,088,720 - MPMX19_03650 0.58 -0.4
1,088,720 - MPMX19_03650 0.58 -1.0
1,088,720 - MPMX19_03650 0.58 -1.4
1,088,720 - MPMX19_03650 0.58 -2.5
1,088,932 + MPMX19_03650 0.84 -0.6
1,088,932 + MPMX19_03650 0.84 -1.4
1,088,932 + MPMX19_03650 0.84 +0.1
1,088,932 + MPMX19_03650 0.84 +0.1
1,088,932 + MPMX19_03650 0.84 -2.1
1,088,932 + MPMX19_03650 0.84 -1.7
1,088,932 + MPMX19_03650 0.84 -2.1
1,088,933 - MPMX19_03650 0.84 -1.3
1,088,933 - MPMX19_03650 0.84 -1.2
1,088,933 - MPMX19_03650 0.84 -1.4
1,088,933 - MPMX19_03650 0.84 +1.0
1,088,933 - MPMX19_03650 0.84 -0.9
1,088,956 + MPMX19_03650 0.87 -2.2
1,088,956 + MPMX19_03650 0.87 -2.1
1,088,956 + MPMX19_03650 0.87 -1.0
1,088,957 - MPMX19_03650 0.87 -2.9
1,088,957 - MPMX19_03650 0.87 -0.6
1,089,065 - -0.8
1,089,065 - -1.2
1,089,065 - -1.3
1,089,080 - +1.1

Or see this region's nucleotide sequence