Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03635

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03634 and MPMX19_03635 are separated by 133 nucleotidesMPMX19_03635 and MPMX19_03636 are separated by 138 nucleotides MPMX19_03634: MPMX19_03634 - Arginase, at 1,070,160 to 1,071,110 _03634 MPMX19_03635: MPMX19_03635 - DNA-binding transcriptional activator DecR, at 1,071,244 to 1,071,693 _03635 MPMX19_03636: MPMX19_03636 - Octopine permease ATP-binding protein P, at 1,071,832 to 1,072,689 _03636 Position (kb) 1071 1072Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1070.614 kb on + strand, within MPMX19_03634at 1070.614 kb on + strand, within MPMX19_03634at 1070.615 kb on - strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.845 kb on + strand, within MPMX19_03634at 1070.846 kb on - strand, within MPMX19_03634at 1070.846 kb on - strand, within MPMX19_03634at 1071.104 kb on - strandat 1071.404 kb on - strand, within MPMX19_03635at 1071.404 kb on - strand, within MPMX19_03635at 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.691 kb on + strandat 1071.692 kb on - strandat 1071.692 kb on - strandat 1071.692 kb on - strandat 1071.692 kb on - strandat 1071.968 kb on + strand, within MPMX19_03636at 1071.968 kb on + strand, within MPMX19_03636at 1071.968 kb on + strand, within MPMX19_03636at 1071.968 kb on + strand, within MPMX19_03636at 1072.050 kb on + strand, within MPMX19_03636at 1072.050 kb on + strand, within MPMX19_03636at 1072.051 kb on - strand, within MPMX19_03636at 1072.051 kb on - strand, within MPMX19_03636at 1072.051 kb on - strand, within MPMX19_03636at 1072.051 kb on - strand, within MPMX19_03636at 1072.051 kb on - strand, within MPMX19_03636at 1072.051 kb on - strand, within MPMX19_03636at 1072.051 kb on - strand, within MPMX19_03636at 1072.051 kb on - strand, within MPMX19_03636at 1072.691 kb on + strandat 1072.692 kb on - strandat 1072.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,070,614 + MPMX19_03634 0.48 +2.9
1,070,614 + MPMX19_03634 0.48 -0.4
1,070,615 - MPMX19_03634 0.48 +1.6
1,070,644 + MPMX19_03634 0.51 -0.6
1,070,644 + MPMX19_03634 0.51 -0.7
1,070,644 + MPMX19_03634 0.51 +0.6
1,070,644 + MPMX19_03634 0.51 +0.6
1,070,644 + MPMX19_03634 0.51 -0.3
1,070,645 - MPMX19_03634 0.51 -0.6
1,070,645 - MPMX19_03634 0.51 -2.0
1,070,645 - MPMX19_03634 0.51 +0.3
1,070,645 - MPMX19_03634 0.51 +0.4
1,070,645 - MPMX19_03634 0.51 +0.6
1,070,645 - MPMX19_03634 0.51 -1.0
1,070,645 - MPMX19_03634 0.51 -0.4
1,070,845 + MPMX19_03634 0.72 +1.6
1,070,846 - MPMX19_03634 0.72 +0.1
1,070,846 - MPMX19_03634 0.72 -1.1
1,071,104 - +0.9
1,071,404 - MPMX19_03635 0.36 -1.6
1,071,404 - MPMX19_03635 0.36 -2.3
1,071,691 + -1.1
1,071,691 + -0.1
1,071,691 + -0.1
1,071,691 + -1.1
1,071,691 + -1.5
1,071,691 + +1.0
1,071,691 + -0.2
1,071,691 + -0.4
1,071,691 + +0.3
1,071,691 + -0.4
1,071,691 + +0.2
1,071,691 + -1.9
1,071,692 - -0.3
1,071,692 - -0.6
1,071,692 - -0.4
1,071,692 - -0.1
1,071,968 + MPMX19_03636 0.16 -0.1
1,071,968 + MPMX19_03636 0.16 +0.2
1,071,968 + MPMX19_03636 0.16 -1.2
1,071,968 + MPMX19_03636 0.16 -0.6
1,072,050 + MPMX19_03636 0.25 +0.6
1,072,050 + MPMX19_03636 0.25 -1.9
1,072,051 - MPMX19_03636 0.26 +0.2
1,072,051 - MPMX19_03636 0.26 -1.6
1,072,051 - MPMX19_03636 0.26 +0.1
1,072,051 - MPMX19_03636 0.26 -1.2
1,072,051 - MPMX19_03636 0.26 -0.2
1,072,051 - MPMX19_03636 0.26 -0.2
1,072,051 - MPMX19_03636 0.26 -0.9
1,072,051 - MPMX19_03636 0.26 -0.1
1,072,691 + -0.3
1,072,692 - -0.5
1,072,692 - -0.1

Or see this region's nucleotide sequence