Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03294 and MPMX19_03295 are separated by 86 nucleotides MPMX19_03295 and MPMX19_03296 are separated by 142 nucleotides MPMX19_03296 and MPMX19_03297 overlap by 4 nucleotides MPMX19_03297 and MPMX19_03298 are separated by 11 nucleotides
MPMX19_03294: MPMX19_03294 - Homoserine kinase, at 641,175 to 642,212
_03294
MPMX19_03295: MPMX19_03295 - HTH-type transcriptional regulator McbR, at 642,299 to 643,006
_03295
MPMX19_03296: MPMX19_03296 - L-carnitine dehydrogenase, at 643,149 to 644,093
_03296
MPMX19_03297: MPMX19_03297 - hypothetical protein, at 644,090 to 644,803
_03297
MPMX19_03298: MPMX19_03298 - hypothetical protein, at 644,815 to 645,546
_03298
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 642.195 kb on + strand at 642.195 kb on + strand at 642.195 kb on + strand at 642.195 kb on + strand at 642.195 kb on + strand at 642.195 kb on + strand at 642.195 kb on + strand at 642.195 kb on + strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.196 kb on - strand at 642.242 kb on + strand at 642.457 kb on - strand, within MPMX19_03295 at 642.493 kb on - strand, within MPMX19_03295 at 642.493 kb on - strand, within MPMX19_03295 at 642.599 kb on - strand, within MPMX19_03295 at 642.757 kb on - strand, within MPMX19_03295 at 642.757 kb on - strand, within MPMX19_03295 at 642.951 kb on + strand at 642.952 kb on - strand at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on + strand, within MPMX19_03296 at 643.452 kb on - strand, within MPMX19_03296 at 643.453 kb on - strand, within MPMX19_03296 at 643.453 kb on - strand, within MPMX19_03296 at 643.611 kb on + strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.612 kb on - strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.653 kb on + strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.654 kb on - strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.848 kb on + strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.849 kb on - strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.884 kb on + strand, within MPMX19_03296 at 643.885 kb on - strand, within MPMX19_03296 at 644.224 kb on + strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.225 kb on - strand, within MPMX19_03297 at 644.304 kb on - strand, within MPMX19_03297 at 644.808 kb on + strand at 645.008 kb on + strand, within MPMX19_03298 at 645.008 kb on + strand, within MPMX19_03298
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 642,195 + +0.4 642,195 + +0.6 642,195 + -0.8 642,195 + -0.9 642,195 + -0.6 642,195 + -1.7 642,195 + -1.2 642,195 + -2.1 642,196 - +0.6 642,196 - -1.9 642,196 - -0.2 642,196 - +0.6 642,196 - +1.0 642,196 - +0.1 642,196 - -0.7 642,196 - -0.4 642,196 - +0.1 642,196 - +0.0 642,242 + -1.6 642,457 - MPMX19_03295 0.22 +0.2 642,493 - MPMX19_03295 0.27 -1.6 642,493 - MPMX19_03295 0.27 -0.4 642,599 - MPMX19_03295 0.42 -1.5 642,757 - MPMX19_03295 0.65 -1.5 642,757 - MPMX19_03295 0.65 -1.0 642,951 + -0.8 642,952 - -0.4 643,452 + MPMX19_03296 0.32 -0.6 643,452 + MPMX19_03296 0.32 +0.8 643,452 + MPMX19_03296 0.32 -0.3 643,452 + MPMX19_03296 0.32 -0.1 643,452 - MPMX19_03296 0.32 -1.3 643,453 - MPMX19_03296 0.32 -1.4 643,453 - MPMX19_03296 0.32 +0.0 643,611 + MPMX19_03296 0.49 -1.6 643,612 - MPMX19_03296 0.49 -0.4 643,612 - MPMX19_03296 0.49 -0.1 643,612 - MPMX19_03296 0.49 +0.6 643,653 + MPMX19_03296 0.53 +1.6 643,653 + MPMX19_03296 0.53 -0.7 643,653 + MPMX19_03296 0.53 +1.1 643,654 - MPMX19_03296 0.53 -0.1 643,654 - MPMX19_03296 0.53 -0.6 643,654 - MPMX19_03296 0.53 -2.1 643,848 + MPMX19_03296 0.74 +0.5 643,848 + MPMX19_03296 0.74 +1.6 643,848 + MPMX19_03296 0.74 +0.2 643,849 - MPMX19_03296 0.74 -0.3 643,849 - MPMX19_03296 0.74 +0.9 643,849 - MPMX19_03296 0.74 -0.9 643,849 - MPMX19_03296 0.74 -1.4 643,849 - MPMX19_03296 0.74 -0.3 643,884 + MPMX19_03296 0.78 +0.7 643,884 + MPMX19_03296 0.78 +0.2 643,884 + MPMX19_03296 0.78 +0.7 643,884 + MPMX19_03296 0.78 -0.5 643,885 - MPMX19_03296 0.78 -1.0 644,224 + MPMX19_03297 0.19 +0.0 644,225 - MPMX19_03297 0.19 -1.1 644,225 - MPMX19_03297 0.19 +0.3 644,225 - MPMX19_03297 0.19 -0.2 644,304 - MPMX19_03297 0.30 -0.0 644,808 + -1.6 645,008 + MPMX19_03298 0.26 -1.6 645,008 + MPMX19_03298 0.26 -1.0
Or see this region's nucleotide sequence