Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03028

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03027 and MPMX19_03028 overlap by 1 nucleotidesMPMX19_03028 and MPMX19_03029 are separated by 258 nucleotides MPMX19_03027: MPMX19_03027 - Xylose transport system permease protein XylH, at 292,380 to 293,702 _03027 MPMX19_03028: MPMX19_03028 - D-xylose-binding periplasmic protein, at 293,702 to 294,760 _03028 MPMX19_03029: MPMX19_03029 - Xylose isomerase, at 295,019 to 296,341 _03029 Position (kb) 293 294 295Strain fitness (log2 ratio) -2 -1 0 1 2at 292.765 kb on + strand, within MPMX19_03027at 292.765 kb on + strand, within MPMX19_03027at 293.254 kb on + strand, within MPMX19_03027at 294.183 kb on + strand, within MPMX19_03028at 294.183 kb on + strand, within MPMX19_03028at 294.183 kb on + strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.408 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.697 kb on + strandat 294.697 kb on + strandat 294.697 kb on + strandat 294.697 kb on + strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.774 kb on + strandat 294.774 kb on + strandat 294.774 kb on + strandat 294.774 kb on + strandat 294.774 kb on + strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.977 kb on + strandat 294.977 kb on + strandat 294.978 kb on - strandat 295.005 kb on + strandat 295.005 kb on + strandat 295.005 kb on + strandat 295.005 kb on + strandat 295.027 kb on - strandat 295.050 kb on + strandat 295.050 kb on + strandat 295.050 kb on + strandat 295.050 kb on + strandat 295.051 kb on - strandat 295.174 kb on - strand, within MPMX19_03029at 295.563 kb on + strand, within MPMX19_03029at 295.563 kb on + strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.581 kb on + strand, within MPMX19_03029at 295.582 kb on - strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.606 kb on - strand, within MPMX19_03029at 295.606 kb on - strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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292,765 + MPMX19_03027 0.29 +0.6
292,765 + MPMX19_03027 0.29 -0.8
293,254 + MPMX19_03027 0.66 -0.2
294,183 + MPMX19_03028 0.45 -1.1
294,183 + MPMX19_03028 0.45 -0.1
294,183 + MPMX19_03028 0.45 -0.8
294,184 - MPMX19_03028 0.46 -0.0
294,184 - MPMX19_03028 0.46 -0.3
294,184 - MPMX19_03028 0.46 +0.3
294,184 - MPMX19_03028 0.46 -0.5
294,300 + MPMX19_03028 0.56 -0.1
294,300 + MPMX19_03028 0.56 -1.5
294,300 + MPMX19_03028 0.56 +0.8
294,300 + MPMX19_03028 0.56 +0.6
294,300 + MPMX19_03028 0.56 +1.1
294,300 + MPMX19_03028 0.56 -1.1
294,300 + MPMX19_03028 0.56 +0.5
294,301 - MPMX19_03028 0.57 +0.9
294,301 - MPMX19_03028 0.57 -0.0
294,301 - MPMX19_03028 0.57 +0.5
294,301 - MPMX19_03028 0.57 -0.1
294,301 - MPMX19_03028 0.57 +0.7
294,301 - MPMX19_03028 0.57 -0.6
294,301 - MPMX19_03028 0.57 +0.0
294,301 - MPMX19_03028 0.57 +0.9
294,301 - MPMX19_03028 0.57 -0.1
294,301 - MPMX19_03028 0.57 -0.3
294,375 + MPMX19_03028 0.64 -0.8
294,375 + MPMX19_03028 0.64 -0.4
294,375 + MPMX19_03028 0.64 -0.2
294,375 + MPMX19_03028 0.64 -0.9
294,375 + MPMX19_03028 0.64 -0.7
294,375 + MPMX19_03028 0.64 -0.4
294,375 + MPMX19_03028 0.64 +0.5
294,376 - MPMX19_03028 0.64 +0.5
294,376 - MPMX19_03028 0.64 +0.5
294,376 - MPMX19_03028 0.64 +0.3
294,376 - MPMX19_03028 0.64 -0.6
294,376 - MPMX19_03028 0.64 +0.2
294,376 - MPMX19_03028 0.64 +0.9
294,376 - MPMX19_03028 0.64 -0.3
294,376 - MPMX19_03028 0.64 -0.9
294,376 - MPMX19_03028 0.64 -0.6
294,376 - MPMX19_03028 0.64 +0.4
294,408 + MPMX19_03028 0.67 -0.2
294,570 + MPMX19_03028 0.82 -0.3
294,570 + MPMX19_03028 0.82 -0.5
294,570 + MPMX19_03028 0.82 -0.6
294,570 + MPMX19_03028 0.82 -1.1
294,570 + MPMX19_03028 0.82 -1.2
294,570 + MPMX19_03028 0.82 +0.9
294,570 + MPMX19_03028 0.82 +1.1
294,570 + MPMX19_03028 0.82 -0.4
294,570 + MPMX19_03028 0.82 +0.9
294,570 + MPMX19_03028 0.82 +0.1
294,570 + MPMX19_03028 0.82 +1.1
294,570 + MPMX19_03028 0.82 -0.4
294,570 + MPMX19_03028 0.82 +0.5
294,570 + MPMX19_03028 0.82 +1.1
294,570 + MPMX19_03028 0.82 -0.8
294,570 + MPMX19_03028 0.82 -0.3
294,571 - MPMX19_03028 0.82 -1.2
294,571 - MPMX19_03028 0.82 -0.6
294,571 - MPMX19_03028 0.82 -0.1
294,571 - MPMX19_03028 0.82 +1.8
294,571 - MPMX19_03028 0.82 -0.8
294,571 - MPMX19_03028 0.82 -0.6
294,571 - MPMX19_03028 0.82 -1.1
294,571 - MPMX19_03028 0.82 -0.9
294,571 - MPMX19_03028 0.82 -1.1
294,697 + +0.3
294,697 + -0.3
294,697 + -0.1
294,697 + +0.3
294,698 - -1.3
294,698 - +0.8
294,698 - +1.1
294,698 - -0.8
294,698 - -0.3
294,698 - -0.2
294,774 + +0.1
294,774 + +0.3
294,774 + +0.1
294,774 + -1.8
294,774 + +0.7
294,775 - +0.2
294,775 - -1.5
294,775 - +0.8
294,775 - -0.1
294,775 - -1.8
294,775 - +0.1
294,775 - +0.8
294,775 - -1.4
294,775 - -0.7
294,775 - -0.8
294,775 - +1.5
294,775 - -1.1
294,775 - -0.2
294,775 - -0.5
294,977 + +1.2
294,977 + -0.5
294,978 - +0.8
295,005 + -1.1
295,005 + +0.8
295,005 + +1.5
295,005 + -0.3
295,027 - +0.3
295,050 + +0.3
295,050 + -0.4
295,050 + -1.0
295,050 + +0.0
295,051 - +0.2
295,174 - MPMX19_03029 0.12 -1.1
295,563 + MPMX19_03029 0.41 +0.4
295,563 + MPMX19_03029 0.41 +1.0
295,564 - MPMX19_03029 0.41 -1.7
295,564 - MPMX19_03029 0.41 +1.1
295,564 - MPMX19_03029 0.41 +0.2
295,581 + MPMX19_03029 0.42 -0.1
295,582 - MPMX19_03029 0.43 -0.2
295,605 + MPMX19_03029 0.44 -0.7
295,605 + MPMX19_03029 0.44 +0.6
295,605 + MPMX19_03029 0.44 +1.1
295,605 + MPMX19_03029 0.44 -0.3
295,606 - MPMX19_03029 0.44 -0.2
295,606 - MPMX19_03029 0.44 +0.6
295,752 + MPMX19_03029 0.55 -0.5
295,752 + MPMX19_03029 0.55 +0.5
295,752 + MPMX19_03029 0.55 +0.1
295,752 + MPMX19_03029 0.55 -1.7
295,753 - MPMX19_03029 0.55 -1.5
295,753 - MPMX19_03029 0.55 -0.2
295,753 - MPMX19_03029 0.55 +0.5

Or see this region's nucleotide sequence