Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02841

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02839 and MPMX19_02840 are separated by 59 nucleotidesMPMX19_02840 and MPMX19_02841 are separated by 11 nucleotidesMPMX19_02841 and MPMX19_02842 are separated by 406 nucleotides MPMX19_02839: MPMX19_02839 - Acetyl-S-ACP:malonate ACP transferase, at 79,435 to 81,090 _02839 MPMX19_02840: MPMX19_02840 - hypothetical protein, at 81,150 to 81,914 _02840 MPMX19_02841: MPMX19_02841 - hypothetical protein, at 81,926 to 82,333 _02841 MPMX19_02842: MPMX19_02842 - HTH-type transcriptional repressor RspR, at 82,740 to 83,450 _02842 Position (kb) 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1at 81.025 kb on + strandat 81.025 kb on + strandat 81.025 kb on + strandat 81.025 kb on + strandat 81.025 kb on + strandat 81.025 kb on + strandat 81.025 kb on + strandat 81.025 kb on + strandat 81.025 kb on + strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.026 kb on - strandat 81.241 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.472 kb on + strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.473 kb on - strand, within MPMX19_02840at 81.521 kb on - strand, within MPMX19_02840at 81.521 kb on - strand, within MPMX19_02840at 81.521 kb on - strand, within MPMX19_02840at 81.521 kb on - strand, within MPMX19_02840at 81.751 kb on + strand, within MPMX19_02840at 81.751 kb on + strand, within MPMX19_02840at 81.752 kb on - strand, within MPMX19_02840at 81.752 kb on - strand, within MPMX19_02840at 81.752 kb on - strand, within MPMX19_02840at 81.927 kb on + strandat 81.928 kb on - strandat 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.122 kb on + strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.123 kb on - strand, within MPMX19_02841at 82.142 kb on - strand, within MPMX19_02841at 82.142 kb on - strand, within MPMX19_02841at 82.142 kb on - strand, within MPMX19_02841at 82.169 kb on + strand, within MPMX19_02841at 82.169 kb on + strand, within MPMX19_02841at 82.191 kb on + strand, within MPMX19_02841at 82.191 kb on + strand, within MPMX19_02841at 82.191 kb on + strand, within MPMX19_02841at 82.192 kb on - strand, within MPMX19_02841at 82.270 kb on + strand, within MPMX19_02841at 82.296 kb on + strandat 82.296 kb on + strandat 82.296 kb on + strandat 82.297 kb on - strandat 82.557 kb on + strandat 82.621 kb on + strandat 82.621 kb on + strandat 82.621 kb on + strandat 82.621 kb on + strandat 82.622 kb on - strandat 82.713 kb on + strandat 82.743 kb on + strandat 82.744 kb on - strandat 83.082 kb on + strand, within MPMX19_02842at 83.082 kb on + strand, within MPMX19_02842at 83.082 kb on + strand, within MPMX19_02842at 83.082 kb on + strand, within MPMX19_02842at 83.083 kb on - strand, within MPMX19_02842at 83.083 kb on - strand, within MPMX19_02842at 83.083 kb on - strand, within MPMX19_02842at 83.083 kb on - strand, within MPMX19_02842at 83.169 kb on + strand, within MPMX19_02842at 83.170 kb on - strand, within MPMX19_02842at 83.170 kb on - strand, within MPMX19_02842at 83.170 kb on - strand, within MPMX19_02842at 83.170 kb on - strand, within MPMX19_02842at 83.170 kb on - strand, within MPMX19_02842at 83.205 kb on + strand, within MPMX19_02842at 83.205 kb on + strand, within MPMX19_02842at 83.205 kb on + strand, within MPMX19_02842at 83.205 kb on + strand, within MPMX19_02842at 83.205 kb on + strand, within MPMX19_02842at 83.206 kb on - strand, within MPMX19_02842at 83.206 kb on - strand, within MPMX19_02842at 83.206 kb on - strand, within MPMX19_02842at 83.213 kb on + strand, within MPMX19_02842

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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81,025 + +0.5
81,025 + +0.1
81,025 + +1.0
81,025 + -0.0
81,025 + +0.2
81,025 + -1.0
81,025 + +1.3
81,025 + +0.3
81,025 + -1.0
81,026 - -1.0
81,026 - -0.7
81,026 - +0.4
81,026 - +0.7
81,026 - -0.6
81,026 - -1.9
81,026 - +0.2
81,026 - -1.7
81,026 - -0.7
81,026 - -1.4
81,026 - -0.3
81,026 - -0.7
81,026 - -0.8
81,026 - -0.7
81,026 - -0.6
81,026 - +1.1
81,241 + MPMX19_02840 0.12 -0.2
81,472 + MPMX19_02840 0.42 -1.3
81,472 + MPMX19_02840 0.42 +1.4
81,472 + MPMX19_02840 0.42 +0.1
81,472 + MPMX19_02840 0.42 -0.0
81,472 + MPMX19_02840 0.42 +0.1
81,472 + MPMX19_02840 0.42 -1.6
81,472 + MPMX19_02840 0.42 -0.2
81,472 + MPMX19_02840 0.42 +0.3
81,472 + MPMX19_02840 0.42 -0.6
81,472 + MPMX19_02840 0.42 -0.5
81,472 + MPMX19_02840 0.42 -1.1
81,472 + MPMX19_02840 0.42 -0.9
81,472 + MPMX19_02840 0.42 -0.5
81,472 + MPMX19_02840 0.42 +1.0
81,472 + MPMX19_02840 0.42 -1.2
81,472 + MPMX19_02840 0.42 -1.9
81,473 - MPMX19_02840 0.42 -2.4
81,473 - MPMX19_02840 0.42 +0.4
81,473 - MPMX19_02840 0.42 +0.4
81,473 - MPMX19_02840 0.42 -1.2
81,473 - MPMX19_02840 0.42 -1.0
81,473 - MPMX19_02840 0.42 -0.7
81,473 - MPMX19_02840 0.42 -0.6
81,473 - MPMX19_02840 0.42 -0.4
81,473 - MPMX19_02840 0.42 +1.7
81,473 - MPMX19_02840 0.42 +0.1
81,473 - MPMX19_02840 0.42 -1.6
81,521 - MPMX19_02840 0.48 -1.6
81,521 - MPMX19_02840 0.48 -1.6
81,521 - MPMX19_02840 0.48 -0.5
81,521 - MPMX19_02840 0.48 -0.1
81,751 + MPMX19_02840 0.79 -0.0
81,751 + MPMX19_02840 0.79 +0.7
81,752 - MPMX19_02840 0.79 -0.6
81,752 - MPMX19_02840 0.79 -0.4
81,752 - MPMX19_02840 0.79 -1.5
81,927 + -0.5
81,928 - +0.2
82,122 + MPMX19_02841 0.48 -1.3
82,122 + MPMX19_02841 0.48 -0.0
82,122 + MPMX19_02841 0.48 -0.5
82,122 + MPMX19_02841 0.48 -0.8
82,122 + MPMX19_02841 0.48 -0.9
82,122 + MPMX19_02841 0.48 -1.8
82,122 + MPMX19_02841 0.48 +0.5
82,122 + MPMX19_02841 0.48 +1.1
82,122 + MPMX19_02841 0.48 +0.3
82,122 + MPMX19_02841 0.48 -0.8
82,122 + MPMX19_02841 0.48 +0.0
82,122 + MPMX19_02841 0.48 -0.3
82,122 + MPMX19_02841 0.48 -0.3
82,122 + MPMX19_02841 0.48 -0.2
82,122 + MPMX19_02841 0.48 -0.8
82,122 + MPMX19_02841 0.48 +0.5
82,123 - MPMX19_02841 0.48 -1.7
82,123 - MPMX19_02841 0.48 -0.5
82,123 - MPMX19_02841 0.48 -0.8
82,123 - MPMX19_02841 0.48 -3.0
82,123 - MPMX19_02841 0.48 +0.5
82,123 - MPMX19_02841 0.48 -1.6
82,123 - MPMX19_02841 0.48 -0.1
82,123 - MPMX19_02841 0.48 +0.7
82,123 - MPMX19_02841 0.48 -1.7
82,123 - MPMX19_02841 0.48 -0.8
82,123 - MPMX19_02841 0.48 +1.0
82,123 - MPMX19_02841 0.48 -1.5
82,142 - MPMX19_02841 0.53 -0.5
82,142 - MPMX19_02841 0.53 -0.9
82,142 - MPMX19_02841 0.53 +0.6
82,169 + MPMX19_02841 0.60 +0.4
82,169 + MPMX19_02841 0.60 -0.0
82,191 + MPMX19_02841 0.65 -2.2
82,191 + MPMX19_02841 0.65 -1.6
82,191 + MPMX19_02841 0.65 +0.5
82,192 - MPMX19_02841 0.65 -0.7
82,270 + MPMX19_02841 0.84 -0.6
82,296 + +0.2
82,296 + -0.5
82,296 + -2.0
82,297 - +0.1
82,557 + +0.5
82,621 + -0.9
82,621 + +0.0
82,621 + -0.5
82,621 + -1.5
82,622 - -0.8
82,713 + -0.1
82,743 + -0.7
82,744 - -0.1
83,082 + MPMX19_02842 0.48 -0.8
83,082 + MPMX19_02842 0.48 -0.3
83,082 + MPMX19_02842 0.48 -2.0
83,082 + MPMX19_02842 0.48 -0.3
83,083 - MPMX19_02842 0.48 +0.6
83,083 - MPMX19_02842 0.48 -2.0
83,083 - MPMX19_02842 0.48 -0.4
83,083 - MPMX19_02842 0.48 +0.2
83,169 + MPMX19_02842 0.60 -2.0
83,170 - MPMX19_02842 0.60 +0.2
83,170 - MPMX19_02842 0.60 -0.1
83,170 - MPMX19_02842 0.60 -0.3
83,170 - MPMX19_02842 0.60 -0.3
83,170 - MPMX19_02842 0.60 -0.3
83,205 + MPMX19_02842 0.65 +0.2
83,205 + MPMX19_02842 0.65 +0.1
83,205 + MPMX19_02842 0.65 +0.3
83,205 + MPMX19_02842 0.65 +0.4
83,205 + MPMX19_02842 0.65 -0.8
83,206 - MPMX19_02842 0.66 +0.1
83,206 - MPMX19_02842 0.66 +0.1
83,206 - MPMX19_02842 0.66 -0.2
83,213 + MPMX19_02842 0.67 +0.7

Or see this region's nucleotide sequence