Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02807 and MPMX19_02808 are separated by 98 nucleotides MPMX19_02808 and MPMX19_02809 are separated by 275 nucleotides
MPMX19_02807: MPMX19_02807 - L-threonine dehydratase biosynthetic IlvA, at 42,169 to 43,698
_02807
MPMX19_02808: MPMX19_02808 - HTH-type transcriptional repressor NanR, at 43,797 to 44,573
_02808
MPMX19_02809: MPMX19_02809 - D-erythronate kinase, at 44,849 to 46,048
_02809
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.036 kb on + strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807 at 43.196 kb on - strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.246 kb on + strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.247 kb on - strand, within MPMX19_02807 at 43.252 kb on + strand, within MPMX19_02807 at 43.253 kb on - strand, within MPMX19_02807 at 43.253 kb on - strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.402 kb on + strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.403 kb on - strand, within MPMX19_02807 at 43.555 kb on + strand at 43.737 kb on + strand at 43.737 kb on + strand at 43.737 kb on + strand at 44.439 kb on + strand, within MPMX19_02808 at 44.571 kb on + strand at 44.650 kb on + strand at 44.670 kb on + strand at 44.678 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.699 kb on + strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 44.700 kb on - strand at 45.006 kb on - strand, within MPMX19_02809 at 45.040 kb on + strand, within MPMX19_02809 at 45.040 kb on + strand, within MPMX19_02809 at 45.040 kb on + strand, within MPMX19_02809 at 45.040 kb on + strand, within MPMX19_02809 at 45.041 kb on - strand, within MPMX19_02809 at 45.041 kb on - strand, within MPMX19_02809 at 45.041 kb on - strand, within MPMX19_02809 at 45.147 kb on - strand, within MPMX19_02809 at 45.230 kb on - strand, within MPMX19_02809 at 45.230 kb on - strand, within MPMX19_02809 at 45.230 kb on - strand, within MPMX19_02809
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 43,036 + MPMX19_02807 0.57 +0.6 43,036 + MPMX19_02807 0.57 -0.0 43,037 - MPMX19_02807 0.57 +0.4 43,037 - MPMX19_02807 0.57 -0.8 43,196 - MPMX19_02807 0.67 -1.3 43,246 + MPMX19_02807 0.70 -0.4 43,246 + MPMX19_02807 0.70 -1.0 43,246 + MPMX19_02807 0.70 -1.0 43,246 + MPMX19_02807 0.70 -1.0 43,246 + MPMX19_02807 0.70 +0.1 43,246 + MPMX19_02807 0.70 -1.3 43,246 + MPMX19_02807 0.70 +0.7 43,247 - MPMX19_02807 0.70 -1.1 43,247 - MPMX19_02807 0.70 +0.3 43,247 - MPMX19_02807 0.70 +0.5 43,252 + MPMX19_02807 0.71 -0.6 43,253 - MPMX19_02807 0.71 -1.0 43,253 - MPMX19_02807 0.71 -0.6 43,402 + MPMX19_02807 0.81 +1.4 43,402 + MPMX19_02807 0.81 +0.1 43,402 + MPMX19_02807 0.81 -0.0 43,403 - MPMX19_02807 0.81 -0.0 43,403 - MPMX19_02807 0.81 -0.5 43,403 - MPMX19_02807 0.81 -0.5 43,403 - MPMX19_02807 0.81 -0.3 43,403 - MPMX19_02807 0.81 -0.2 43,403 - MPMX19_02807 0.81 -1.2 43,403 - MPMX19_02807 0.81 -0.2 43,555 + +1.5 43,737 + +0.3 43,737 + -1.7 43,737 + -1.1 44,439 + MPMX19_02808 0.83 +0.1 44,571 + -1.8 44,650 + -1.2 44,670 + -0.4 44,678 + -1.3 44,699 + -0.3 44,699 + -2.3 44,699 + +0.5 44,699 + -1.6 44,699 + -2.4 44,699 + -0.4 44,699 + -0.5 44,699 + -1.3 44,699 + -0.7 44,699 + -0.3 44,699 + -0.0 44,699 + -0.1 44,699 + -0.3 44,699 + -0.3 44,699 + -1.6 44,699 + -0.0 44,699 + -0.8 44,699 + +0.0 44,699 + -0.6 44,699 + -0.2 44,699 + +0.5 44,699 + -1.3 44,700 - +0.1 44,700 - -0.0 44,700 - -0.5 44,700 - -1.9 44,700 - +0.5 44,700 - +1.0 44,700 - +0.3 44,700 - +0.4 44,700 - +0.6 44,700 - +2.3 44,700 - +0.3 44,700 - +0.8 44,700 - -1.6 44,700 - -1.0 44,700 - -1.0 44,700 - +1.3 44,700 - -0.2 44,700 - +0.2 44,700 - +0.2 44,700 - +0.7 44,700 - +0.7 44,700 - -0.0 44,700 - -0.9 44,700 - +1.0 44,700 - -0.6 44,700 - -0.0 44,700 - -0.0 44,700 - +0.7 44,700 - -1.1 44,700 - -1.7 45,006 - MPMX19_02809 0.13 -0.0 45,040 + MPMX19_02809 0.16 -0.1 45,040 + MPMX19_02809 0.16 -1.3 45,040 + MPMX19_02809 0.16 -0.7 45,040 + MPMX19_02809 0.16 -0.6 45,041 - MPMX19_02809 0.16 +0.1 45,041 - MPMX19_02809 0.16 +1.5 45,041 - MPMX19_02809 0.16 -0.5 45,147 - MPMX19_02809 0.25 -0.5 45,230 - MPMX19_02809 0.32 -1.3 45,230 - MPMX19_02809 0.32 +0.8 45,230 - MPMX19_02809 0.32 +1.0
Or see this region's nucleotide sequence