Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02410

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02409 and MPMX19_02410 are separated by 5 nucleotidesMPMX19_02410 and MPMX19_02411 are separated by 11 nucleotidesMPMX19_02411 and MPMX19_02412 are separated by 276 nucleotides MPMX19_02409: MPMX19_02409 - Succinate dehydrogenase flavoprotein subunit, at 2,529,631 to 2,531,415 _02409 MPMX19_02410: MPMX19_02410 - hypothetical protein, at 2,531,421 to 2,531,816 _02410 MPMX19_02411: MPMX19_02411 - Succinate dehydrogenase cytochrome b556 subunit, at 2,531,828 to 2,532,217 _02411 MPMX19_02412: MPMX19_02412 - hypothetical protein, at 2,532,494 to 2,532,757 _02412 Position (kb) 2531 2532Strain fitness (log2 ratio) -2 -1 0 1 2at 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.314 kb on - strandat 2532.334 kb on - strandat 2532.334 kb on - strandat 2532.334 kb on - strandat 2532.334 kb on - strandat 2532.334 kb on - strandat 2532.445 kb on + strandat 2532.445 kb on + strandat 2532.445 kb on + strandat 2532.445 kb on + strandat 2532.446 kb on - strandat 2532.446 kb on - strandat 2532.448 kb on + strandat 2532.448 kb on + strandat 2532.448 kb on + strandat 2532.448 kb on + strandat 2532.448 kb on + strandat 2532.449 kb on - strandat 2532.449 kb on - strandat 2532.449 kb on - strandat 2532.449 kb on - strandat 2532.495 kb on + strandat 2532.495 kb on + strandat 2532.495 kb on + strandat 2532.495 kb on + strandat 2532.495 kb on + strandat 2532.495 kb on + strandat 2532.496 kb on - strandat 2532.496 kb on - strandat 2532.496 kb on - strandat 2532.496 kb on - strandat 2532.496 kb on - strandat 2532.496 kb on - strandat 2532.496 kb on - strandat 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.534 kb on + strand, within MPMX19_02412at 2532.535 kb on - strand, within MPMX19_02412at 2532.535 kb on - strand, within MPMX19_02412at 2532.535 kb on - strand, within MPMX19_02412at 2532.535 kb on - strand, within MPMX19_02412at 2532.535 kb on - strand, within MPMX19_02412at 2532.535 kb on - strand, within MPMX19_02412at 2532.535 kb on - strand, within MPMX19_02412at 2532.535 kb on - strand, within MPMX19_02412at 2532.544 kb on + strand, within MPMX19_02412at 2532.544 kb on + strand, within MPMX19_02412at 2532.544 kb on + strand, within MPMX19_02412at 2532.545 kb on - strand, within MPMX19_02412at 2532.545 kb on - strand, within MPMX19_02412at 2532.545 kb on - strand, within MPMX19_02412at 2532.636 kb on + strand, within MPMX19_02412at 2532.684 kb on + strand, within MPMX19_02412at 2532.684 kb on + strand, within MPMX19_02412at 2532.684 kb on + strand, within MPMX19_02412at 2532.684 kb on + strand, within MPMX19_02412at 2532.684 kb on + strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412at 2532.685 kb on - strand, within MPMX19_02412

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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2,532,314 - -0.6
2,532,314 - -0.7
2,532,314 - -0.6
2,532,314 - +1.1
2,532,314 - +0.0
2,532,314 - -0.7
2,532,314 - -0.9
2,532,314 - -0.7
2,532,314 - +0.2
2,532,314 - -0.5
2,532,314 - -1.2
2,532,334 - -1.5
2,532,334 - -1.8
2,532,334 - -0.6
2,532,334 - -0.2
2,532,334 - -0.3
2,532,445 + +0.2
2,532,445 + +0.7
2,532,445 + -0.1
2,532,445 + -0.2
2,532,446 - -1.5
2,532,446 - -2.4
2,532,448 + -1.1
2,532,448 + +1.2
2,532,448 + -0.7
2,532,448 + +0.3
2,532,448 + -2.3
2,532,449 - -0.4
2,532,449 - -0.8
2,532,449 - +0.1
2,532,449 - -0.1
2,532,495 + -0.3
2,532,495 + -0.2
2,532,495 + -0.2
2,532,495 + +0.5
2,532,495 + -0.5
2,532,495 + -1.5
2,532,496 - +0.3
2,532,496 - -0.0
2,532,496 - +0.3
2,532,496 - -0.7
2,532,496 - +2.5
2,532,496 - +1.5
2,532,496 - -0.0
2,532,534 + MPMX19_02412 0.15 +0.1
2,532,534 + MPMX19_02412 0.15 -1.3
2,532,534 + MPMX19_02412 0.15 -0.2
2,532,534 + MPMX19_02412 0.15 +0.1
2,532,534 + MPMX19_02412 0.15 -0.3
2,532,534 + MPMX19_02412 0.15 -0.4
2,532,534 + MPMX19_02412 0.15 -0.2
2,532,534 + MPMX19_02412 0.15 -0.1
2,532,534 + MPMX19_02412 0.15 +1.5
2,532,534 + MPMX19_02412 0.15 -1.2
2,532,534 + MPMX19_02412 0.15 -1.2
2,532,534 + MPMX19_02412 0.15 +1.1
2,532,535 - MPMX19_02412 0.16 +0.8
2,532,535 - MPMX19_02412 0.16 -1.7
2,532,535 - MPMX19_02412 0.16 -0.2
2,532,535 - MPMX19_02412 0.16 -0.5
2,532,535 - MPMX19_02412 0.16 +0.1
2,532,535 - MPMX19_02412 0.16 -0.8
2,532,535 - MPMX19_02412 0.16 -2.1
2,532,535 - MPMX19_02412 0.16 +0.0
2,532,544 + MPMX19_02412 0.19 -0.9
2,532,544 + MPMX19_02412 0.19 -0.2
2,532,544 + MPMX19_02412 0.19 -2.6
2,532,545 - MPMX19_02412 0.19 -1.1
2,532,545 - MPMX19_02412 0.19 -1.1
2,532,545 - MPMX19_02412 0.19 -0.7
2,532,636 + MPMX19_02412 0.54 -0.7
2,532,684 + MPMX19_02412 0.72 -0.7
2,532,684 + MPMX19_02412 0.72 -1.1
2,532,684 + MPMX19_02412 0.72 -1.6
2,532,684 + MPMX19_02412 0.72 -0.4
2,532,684 + MPMX19_02412 0.72 +0.0
2,532,685 - MPMX19_02412 0.72 -0.1
2,532,685 - MPMX19_02412 0.72 -0.7
2,532,685 - MPMX19_02412 0.72 -0.2
2,532,685 - MPMX19_02412 0.72 -2.1
2,532,685 - MPMX19_02412 0.72 +0.3
2,532,685 - MPMX19_02412 0.72 -0.1
2,532,685 - MPMX19_02412 0.72 -0.5
2,532,685 - MPMX19_02412 0.72 -0.8
2,532,685 - MPMX19_02412 0.72 -0.9
2,532,685 - MPMX19_02412 0.72 +0.9
2,532,685 - MPMX19_02412 0.72 +0.4
2,532,685 - MPMX19_02412 0.72 -1.1
2,532,685 - MPMX19_02412 0.72 +0.4
2,532,685 - MPMX19_02412 0.72 -0.8

Or see this region's nucleotide sequence