Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03319 and OHPLBJKB_03320 overlap by 4 nucleotides OHPLBJKB_03320 and OHPLBJKB_03321 overlap by 4 nucleotides OHPLBJKB_03321 and OHPLBJKB_03322 are separated by 9 nucleotides
OHPLBJKB_03319: OHPLBJKB_03319 - 4-hydroxy-2-oxovalerate aldolase, at 3,463,251 to 3,464,264
_03319
OHPLBJKB_03320: OHPLBJKB_03320 - Acetaldehyde dehydrogenase, at 3,464,261 to 3,465,211
_03320
OHPLBJKB_03321: OHPLBJKB_03321 - 2-keto-4-pentenoate hydratase, at 3,465,208 to 3,466,017
_03321
OHPLBJKB_03322: OHPLBJKB_03322 - 2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase, at 3,466,027 to 3,466,893
_03322
Position (kb)
3464
3465
3466 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3463.292 kb on + strand at 3463.292 kb on + strand at 3463.293 kb on - strand at 3463.354 kb on - strand, within OHPLBJKB_03319 at 3463.354 kb on - strand, within OHPLBJKB_03319 at 3463.501 kb on + strand, within OHPLBJKB_03319 at 3463.502 kb on - strand, within OHPLBJKB_03319 at 3463.502 kb on - strand, within OHPLBJKB_03319 at 3463.502 kb on - strand, within OHPLBJKB_03319 at 3463.532 kb on + strand, within OHPLBJKB_03319 at 3463.774 kb on + strand, within OHPLBJKB_03319 at 3463.774 kb on + strand, within OHPLBJKB_03319 at 3463.774 kb on + strand, within OHPLBJKB_03319 at 3463.774 kb on + strand, within OHPLBJKB_03319 at 3463.774 kb on + strand, within OHPLBJKB_03319 at 3463.774 kb on + strand, within OHPLBJKB_03319 at 3463.775 kb on - strand, within OHPLBJKB_03319 at 3463.775 kb on - strand, within OHPLBJKB_03319 at 3463.778 kb on + strand, within OHPLBJKB_03319 at 3463.778 kb on + strand, within OHPLBJKB_03319 at 3463.841 kb on + strand, within OHPLBJKB_03319 at 3463.898 kb on + strand, within OHPLBJKB_03319 at 3463.898 kb on + strand, within OHPLBJKB_03319 at 3464.093 kb on + strand, within OHPLBJKB_03319 at 3464.093 kb on + strand, within OHPLBJKB_03319 at 3464.216 kb on + strand at 3464.217 kb on - strand at 3464.217 kb on - strand at 3464.243 kb on + strand at 3464.243 kb on + strand at 3464.245 kb on + strand at 3464.246 kb on - strand at 3464.336 kb on - strand at 3464.355 kb on + strand at 3464.368 kb on - strand, within OHPLBJKB_03320 at 3464.368 kb on - strand, within OHPLBJKB_03320 at 3464.505 kb on + strand, within OHPLBJKB_03320 at 3464.505 kb on + strand, within OHPLBJKB_03320 at 3464.505 kb on + strand, within OHPLBJKB_03320 at 3464.505 kb on + strand, within OHPLBJKB_03320 at 3464.506 kb on - strand, within OHPLBJKB_03320 at 3464.506 kb on - strand, within OHPLBJKB_03320 at 3464.506 kb on - strand, within OHPLBJKB_03320 at 3464.577 kb on - strand, within OHPLBJKB_03320 at 3464.577 kb on - strand, within OHPLBJKB_03320 at 3464.577 kb on - strand, within OHPLBJKB_03320 at 3464.580 kb on + strand, within OHPLBJKB_03320 at 3464.580 kb on + strand, within OHPLBJKB_03320 at 3464.580 kb on + strand, within OHPLBJKB_03320 at 3464.580 kb on + strand, within OHPLBJKB_03320 at 3464.581 kb on - strand, within OHPLBJKB_03320 at 3464.581 kb on - strand, within OHPLBJKB_03320 at 3464.581 kb on - strand, within OHPLBJKB_03320 at 3464.581 kb on - strand, within OHPLBJKB_03320 at 3464.581 kb on - strand, within OHPLBJKB_03320 at 3464.630 kb on - strand, within OHPLBJKB_03320 at 3464.740 kb on + strand, within OHPLBJKB_03320 at 3464.741 kb on - strand, within OHPLBJKB_03320 at 3464.990 kb on + strand, within OHPLBJKB_03320 at 3464.990 kb on + strand, within OHPLBJKB_03320 at 3464.991 kb on - strand, within OHPLBJKB_03320 at 3464.991 kb on - strand, within OHPLBJKB_03320 at 3464.991 kb on - strand, within OHPLBJKB_03320 at 3464.991 kb on - strand, within OHPLBJKB_03320 at 3465.200 kb on - strand at 3465.205 kb on + strand at 3465.205 kb on + strand at 3465.206 kb on - strand at 3465.262 kb on + strand at 3465.262 kb on + strand at 3465.262 kb on + strand at 3465.262 kb on + strand at 3465.262 kb on + strand at 3465.263 kb on - strand at 3465.263 kb on - strand at 3465.263 kb on - strand at 3465.263 kb on - strand at 3465.263 kb on - strand at 3465.263 kb on - strand at 3465.339 kb on + strand, within OHPLBJKB_03321 at 3465.339 kb on + strand, within OHPLBJKB_03321 at 3465.339 kb on + strand, within OHPLBJKB_03321 at 3465.339 kb on + strand, within OHPLBJKB_03321 at 3465.339 kb on + strand, within OHPLBJKB_03321 at 3465.340 kb on - strand, within OHPLBJKB_03321 at 3465.340 kb on - strand, within OHPLBJKB_03321 at 3465.453 kb on + strand, within OHPLBJKB_03321 at 3465.527 kb on + strand, within OHPLBJKB_03321 at 3465.527 kb on + strand, within OHPLBJKB_03321 at 3465.527 kb on + strand, within OHPLBJKB_03321 at 3465.527 kb on + strand, within OHPLBJKB_03321 at 3465.527 kb on + strand, within OHPLBJKB_03321 at 3465.528 kb on - strand, within OHPLBJKB_03321 at 3465.528 kb on - strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.638 kb on + strand, within OHPLBJKB_03321 at 3465.639 kb on - strand, within OHPLBJKB_03321 at 3465.639 kb on - strand, within OHPLBJKB_03321 at 3465.639 kb on - strand, within OHPLBJKB_03321 at 3465.639 kb on - strand, within OHPLBJKB_03321 at 3465.639 kb on - strand, within OHPLBJKB_03321 at 3465.772 kb on + strand, within OHPLBJKB_03321 at 3465.772 kb on + strand, within OHPLBJKB_03321 at 3465.840 kb on + strand, within OHPLBJKB_03321 at 3465.848 kb on - strand, within OHPLBJKB_03321 at 3465.876 kb on - strand, within OHPLBJKB_03321 at 3465.876 kb on - strand, within OHPLBJKB_03321 at 3465.886 kb on + strand, within OHPLBJKB_03321 at 3465.886 kb on + strand, within OHPLBJKB_03321 at 3465.886 kb on + strand, within OHPLBJKB_03321 at 3465.886 kb on + strand, within OHPLBJKB_03321 at 3465.886 kb on + strand, within OHPLBJKB_03321 at 3465.886 kb on + strand, within OHPLBJKB_03321 at 3465.887 kb on - strand, within OHPLBJKB_03321 at 3465.887 kb on - strand, within OHPLBJKB_03321 at 3465.887 kb on - strand, within OHPLBJKB_03321 at 3465.902 kb on + strand, within OHPLBJKB_03321 at 3465.903 kb on - strand, within OHPLBJKB_03321 at 3466.005 kb on + strand at 3466.006 kb on - strand at 3466.006 kb on - strand at 3466.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 3,463,292 + +0.8 3,463,292 + -0.2 3,463,293 - -0.2 3,463,354 - OHPLBJKB_03319 0.10 +0.4 3,463,354 - OHPLBJKB_03319 0.10 -0.6 3,463,501 + OHPLBJKB_03319 0.25 -0.2 3,463,502 - OHPLBJKB_03319 0.25 -0.0 3,463,502 - OHPLBJKB_03319 0.25 +0.6 3,463,502 - OHPLBJKB_03319 0.25 -0.1 3,463,532 + OHPLBJKB_03319 0.28 -2.4 3,463,774 + OHPLBJKB_03319 0.52 +0.3 3,463,774 + OHPLBJKB_03319 0.52 +0.8 3,463,774 + OHPLBJKB_03319 0.52 -0.1 3,463,774 + OHPLBJKB_03319 0.52 -1.4 3,463,774 + OHPLBJKB_03319 0.52 -0.0 3,463,774 + OHPLBJKB_03319 0.52 -0.1 3,463,775 - OHPLBJKB_03319 0.52 -1.9 3,463,775 - OHPLBJKB_03319 0.52 +0.3 3,463,778 + OHPLBJKB_03319 0.52 +0.1 3,463,778 + OHPLBJKB_03319 0.52 +0.3 3,463,841 + OHPLBJKB_03319 0.58 -0.2 3,463,898 + OHPLBJKB_03319 0.64 +0.5 3,463,898 + OHPLBJKB_03319 0.64 +0.7 3,464,093 + OHPLBJKB_03319 0.83 -0.1 3,464,093 + OHPLBJKB_03319 0.83 +0.3 3,464,216 + -0.4 3,464,217 - -1.3 3,464,217 - -0.4 3,464,243 + +1.5 3,464,243 + -0.6 3,464,245 + +1.4 3,464,246 - +0.2 3,464,336 - +0.2 3,464,355 + +0.4 3,464,368 - OHPLBJKB_03320 0.11 -0.5 3,464,368 - OHPLBJKB_03320 0.11 -0.2 3,464,505 + OHPLBJKB_03320 0.26 +0.2 3,464,505 + OHPLBJKB_03320 0.26 +0.8 3,464,505 + OHPLBJKB_03320 0.26 -2.1 3,464,505 + OHPLBJKB_03320 0.26 +0.3 3,464,506 - OHPLBJKB_03320 0.26 -0.0 3,464,506 - OHPLBJKB_03320 0.26 +0.4 3,464,506 - OHPLBJKB_03320 0.26 -0.2 3,464,577 - OHPLBJKB_03320 0.33 +0.0 3,464,577 - OHPLBJKB_03320 0.33 -1.1 3,464,577 - OHPLBJKB_03320 0.33 -0.8 3,464,580 + OHPLBJKB_03320 0.34 +0.6 3,464,580 + OHPLBJKB_03320 0.34 +0.5 3,464,580 + OHPLBJKB_03320 0.34 -0.4 3,464,580 + OHPLBJKB_03320 0.34 +0.8 3,464,581 - OHPLBJKB_03320 0.34 -0.7 3,464,581 - OHPLBJKB_03320 0.34 +0.1 3,464,581 - OHPLBJKB_03320 0.34 -1.2 3,464,581 - OHPLBJKB_03320 0.34 -0.6 3,464,581 - OHPLBJKB_03320 0.34 -0.9 3,464,630 - OHPLBJKB_03320 0.39 -0.3 3,464,740 + OHPLBJKB_03320 0.50 -0.8 3,464,741 - OHPLBJKB_03320 0.50 -1.5 3,464,990 + OHPLBJKB_03320 0.77 +0.3 3,464,990 + OHPLBJKB_03320 0.77 -0.4 3,464,991 - OHPLBJKB_03320 0.77 -0.7 3,464,991 - OHPLBJKB_03320 0.77 -0.0 3,464,991 - OHPLBJKB_03320 0.77 +0.4 3,464,991 - OHPLBJKB_03320 0.77 -1.4 3,465,200 - +0.1 3,465,205 + -0.7 3,465,205 + -0.0 3,465,206 - -0.4 3,465,262 + +2.0 3,465,262 + -0.4 3,465,262 + -0.9 3,465,262 + -0.5 3,465,262 + +0.3 3,465,263 - +0.3 3,465,263 - +0.2 3,465,263 - -0.7 3,465,263 - -0.3 3,465,263 - +0.6 3,465,263 - +0.4 3,465,339 + OHPLBJKB_03321 0.16 +0.3 3,465,339 + OHPLBJKB_03321 0.16 -0.7 3,465,339 + OHPLBJKB_03321 0.16 -0.1 3,465,339 + OHPLBJKB_03321 0.16 +0.0 3,465,339 + OHPLBJKB_03321 0.16 +0.6 3,465,340 - OHPLBJKB_03321 0.16 -0.2 3,465,340 - OHPLBJKB_03321 0.16 -0.3 3,465,453 + OHPLBJKB_03321 0.30 +0.2 3,465,527 + OHPLBJKB_03321 0.39 -0.4 3,465,527 + OHPLBJKB_03321 0.39 +0.3 3,465,527 + OHPLBJKB_03321 0.39 +0.4 3,465,527 + OHPLBJKB_03321 0.39 +1.1 3,465,527 + OHPLBJKB_03321 0.39 -0.5 3,465,528 - OHPLBJKB_03321 0.40 +1.0 3,465,528 - OHPLBJKB_03321 0.40 -0.1 3,465,638 + OHPLBJKB_03321 0.53 -0.1 3,465,638 + OHPLBJKB_03321 0.53 -0.4 3,465,638 + OHPLBJKB_03321 0.53 +0.3 3,465,638 + OHPLBJKB_03321 0.53 +0.3 3,465,638 + OHPLBJKB_03321 0.53 -1.0 3,465,638 + OHPLBJKB_03321 0.53 -0.6 3,465,638 + OHPLBJKB_03321 0.53 -0.0 3,465,638 + OHPLBJKB_03321 0.53 -0.2 3,465,638 + OHPLBJKB_03321 0.53 +0.2 3,465,639 - OHPLBJKB_03321 0.53 -1.5 3,465,639 - OHPLBJKB_03321 0.53 -0.6 3,465,639 - OHPLBJKB_03321 0.53 -0.8 3,465,639 - OHPLBJKB_03321 0.53 -0.4 3,465,639 - OHPLBJKB_03321 0.53 +0.1 3,465,772 + OHPLBJKB_03321 0.70 -0.8 3,465,772 + OHPLBJKB_03321 0.70 +1.3 3,465,840 + OHPLBJKB_03321 0.78 +0.2 3,465,848 - OHPLBJKB_03321 0.79 -0.5 3,465,876 - OHPLBJKB_03321 0.82 +0.6 3,465,876 - OHPLBJKB_03321 0.82 -0.6 3,465,886 + OHPLBJKB_03321 0.84 +0.0 3,465,886 + OHPLBJKB_03321 0.84 -0.7 3,465,886 + OHPLBJKB_03321 0.84 +1.2 3,465,886 + OHPLBJKB_03321 0.84 -1.8 3,465,886 + OHPLBJKB_03321 0.84 -0.3 3,465,886 + OHPLBJKB_03321 0.84 +0.7 3,465,887 - OHPLBJKB_03321 0.84 +0.0 3,465,887 - OHPLBJKB_03321 0.84 -0.7 3,465,887 - OHPLBJKB_03321 0.84 -1.0 3,465,902 + OHPLBJKB_03321 0.86 -0.0 3,465,903 - OHPLBJKB_03321 0.86 +0.3 3,466,005 + +0.1 3,466,006 - -1.0 3,466,006 - -0.6 3,466,113 + -1.0
Or see this region's nucleotide sequence