Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02155

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02153 and OHPLBJKB_02154 are separated by 190 nucleotidesOHPLBJKB_02154 and OHPLBJKB_02155 are separated by 4 nucleotidesOHPLBJKB_02155 and OHPLBJKB_02156 overlap by 53 nucleotidesOHPLBJKB_02156 and OHPLBJKB_02157 are separated by 113 nucleotidesOHPLBJKB_02157 and OHPLBJKB_02158 overlap by 4 nucleotides OHPLBJKB_02153: OHPLBJKB_02153 - HTH-type transcriptional regulator GadW, at 2,231,530 to 2,232,243 _02153 OHPLBJKB_02154: OHPLBJKB_02154 - hypothetical protein, at 2,232,434 to 2,232,649 _02154 OHPLBJKB_02155: OHPLBJKB_02155 - hypothetical protein, at 2,232,654 to 2,233,205 _02155 OHPLBJKB_02156: OHPLBJKB_02156 - hypothetical protein, at 2,233,153 to 2,233,413 _02156 OHPLBJKB_02157: OHPLBJKB_02157 - Lysozyme RrrD, at 2,233,527 to 2,234,060 _02157 OHPLBJKB_02158: OHPLBJKB_02158 - hypothetical protein, at 2,234,057 to 2,234,554 _02158 Position (kb) 2232 2233 2234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2231.744 kb on + strand, within OHPLBJKB_02153at 2231.929 kb on - strand, within OHPLBJKB_02153at 2231.955 kb on + strand, within OHPLBJKB_02153at 2232.118 kb on + strand, within OHPLBJKB_02153at 2232.248 kb on + strandat 2232.373 kb on - strandat 2232.373 kb on - strandat 2232.404 kb on - strandat 2232.448 kb on + strandat 2232.448 kb on + strandat 2232.448 kb on + strandat 2232.448 kb on + strandat 2232.549 kb on + strand, within OHPLBJKB_02154at 2232.549 kb on + strand, within OHPLBJKB_02154at 2232.549 kb on + strand, within OHPLBJKB_02154at 2232.549 kb on + strand, within OHPLBJKB_02154at 2232.549 kb on + strand, within OHPLBJKB_02154at 2232.549 kb on + strand, within OHPLBJKB_02154at 2232.550 kb on - strand, within OHPLBJKB_02154at 2232.555 kb on + strand, within OHPLBJKB_02154at 2232.556 kb on - strand, within OHPLBJKB_02154at 2232.570 kb on + strand, within OHPLBJKB_02154at 2232.570 kb on + strand, within OHPLBJKB_02154at 2232.588 kb on - strand, within OHPLBJKB_02154at 2232.603 kb on - strand, within OHPLBJKB_02154at 2232.603 kb on - strand, within OHPLBJKB_02154at 2232.647 kb on + strandat 2232.715 kb on + strand, within OHPLBJKB_02155at 2232.869 kb on - strand, within OHPLBJKB_02155at 2232.940 kb on - strand, within OHPLBJKB_02155at 2232.940 kb on - strand, within OHPLBJKB_02155at 2232.965 kb on + strand, within OHPLBJKB_02155at 2233.135 kb on - strand, within OHPLBJKB_02155at 2233.155 kb on - strandat 2233.203 kb on + strandat 2233.265 kb on + strand, within OHPLBJKB_02156at 2233.294 kb on - strand, within OHPLBJKB_02156at 2233.348 kb on + strand, within OHPLBJKB_02156at 2233.349 kb on - strand, within OHPLBJKB_02156at 2233.392 kb on + strandat 2233.392 kb on + strandat 2233.396 kb on + strandat 2233.397 kb on - strandat 2233.397 kb on - strandat 2233.413 kb on + strandat 2233.414 kb on - strandat 2233.482 kb on + strandat 2233.482 kb on + strandat 2233.483 kb on - strandat 2233.523 kb on - strandat 2233.534 kb on + strandat 2233.535 kb on - strandat 2233.545 kb on + strandat 2233.546 kb on - strandat 2233.670 kb on - strand, within OHPLBJKB_02157at 2233.804 kb on + strand, within OHPLBJKB_02157at 2233.804 kb on + strand, within OHPLBJKB_02157at 2233.805 kb on - strand, within OHPLBJKB_02157at 2233.874 kb on + strand, within OHPLBJKB_02157at 2233.875 kb on - strand, within OHPLBJKB_02157at 2233.897 kb on - strand, within OHPLBJKB_02157at 2233.897 kb on - strand, within OHPLBJKB_02157at 2233.992 kb on - strand, within OHPLBJKB_02157at 2233.998 kb on + strand, within OHPLBJKB_02157at 2234.035 kb on + strandat 2234.068 kb on - strandat 2234.111 kb on - strand, within OHPLBJKB_02158

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,231,744 + OHPLBJKB_02153 0.30 -0.6
2,231,929 - OHPLBJKB_02153 0.56 -0.2
2,231,955 + OHPLBJKB_02153 0.60 +1.5
2,232,118 + OHPLBJKB_02153 0.82 +0.3
2,232,248 + -1.8
2,232,373 - -0.4
2,232,373 - +3.1
2,232,404 - -1.6
2,232,448 + -0.3
2,232,448 + -0.8
2,232,448 + -0.5
2,232,448 + -0.6
2,232,549 + OHPLBJKB_02154 0.53 +0.3
2,232,549 + OHPLBJKB_02154 0.53 -0.6
2,232,549 + OHPLBJKB_02154 0.53 +0.7
2,232,549 + OHPLBJKB_02154 0.53 -0.3
2,232,549 + OHPLBJKB_02154 0.53 -0.3
2,232,549 + OHPLBJKB_02154 0.53 -0.7
2,232,550 - OHPLBJKB_02154 0.54 -0.9
2,232,555 + OHPLBJKB_02154 0.56 +0.4
2,232,556 - OHPLBJKB_02154 0.56 +0.4
2,232,570 + OHPLBJKB_02154 0.63 +0.7
2,232,570 + OHPLBJKB_02154 0.63 -0.6
2,232,588 - OHPLBJKB_02154 0.71 -0.3
2,232,603 - OHPLBJKB_02154 0.78 +0.7
2,232,603 - OHPLBJKB_02154 0.78 +0.3
2,232,647 + +0.3
2,232,715 + OHPLBJKB_02155 0.11 -1.2
2,232,869 - OHPLBJKB_02155 0.39 +1.0
2,232,940 - OHPLBJKB_02155 0.52 +0.1
2,232,940 - OHPLBJKB_02155 0.52 -0.1
2,232,965 + OHPLBJKB_02155 0.56 -2.1
2,233,135 - OHPLBJKB_02155 0.87 -0.6
2,233,155 - -2.5
2,233,203 + -0.2
2,233,265 + OHPLBJKB_02156 0.43 +0.3
2,233,294 - OHPLBJKB_02156 0.54 +0.8
2,233,348 + OHPLBJKB_02156 0.75 +0.4
2,233,349 - OHPLBJKB_02156 0.75 -1.6
2,233,392 + +0.7
2,233,392 + +0.1
2,233,396 + -0.6
2,233,397 - +0.2
2,233,397 - -1.3
2,233,413 + +0.5
2,233,414 - +0.1
2,233,482 + -0.2
2,233,482 + +1.1
2,233,483 - -0.1
2,233,523 - +0.5
2,233,534 + +0.1
2,233,535 - +0.1
2,233,545 + +0.1
2,233,546 - -1.9
2,233,670 - OHPLBJKB_02157 0.27 -0.2
2,233,804 + OHPLBJKB_02157 0.52 -1.0
2,233,804 + OHPLBJKB_02157 0.52 -0.7
2,233,805 - OHPLBJKB_02157 0.52 +1.1
2,233,874 + OHPLBJKB_02157 0.65 +0.1
2,233,875 - OHPLBJKB_02157 0.65 -1.6
2,233,897 - OHPLBJKB_02157 0.69 +1.1
2,233,897 - OHPLBJKB_02157 0.69 +0.5
2,233,992 - OHPLBJKB_02157 0.87 +0.4
2,233,998 + OHPLBJKB_02157 0.88 +0.6
2,234,035 + +0.5
2,234,068 - +0.8
2,234,111 - OHPLBJKB_02158 0.11 +0.0

Or see this region's nucleotide sequence