Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00887

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00886 and OHPLBJKB_00887 are separated by 29 nucleotidesOHPLBJKB_00887 and OHPLBJKB_00888 are separated by 314 nucleotides OHPLBJKB_00886: OHPLBJKB_00886 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 908,456 to 909,292 _00886 OHPLBJKB_00887: OHPLBJKB_00887 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 909,322 to 910,083 _00887 OHPLBJKB_00888: OHPLBJKB_00888 - Arabinose-proton symporter, at 910,398 to 911,816 _00888 Position (kb) 909 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 908.374 kb on + strandat 908.375 kb on - strandat 908.375 kb on - strandat 908.375 kb on - strandat 908.375 kb on - strandat 908.375 kb on - strandat 908.463 kb on + strandat 908.463 kb on + strandat 908.463 kb on + strandat 908.464 kb on - strandat 908.542 kb on - strand, within OHPLBJKB_00886at 908.558 kb on + strand, within OHPLBJKB_00886at 908.558 kb on + strand, within OHPLBJKB_00886at 908.559 kb on - strand, within OHPLBJKB_00886at 908.559 kb on - strand, within OHPLBJKB_00886at 908.559 kb on - strand, within OHPLBJKB_00886at 908.559 kb on - strand, within OHPLBJKB_00886at 908.591 kb on - strand, within OHPLBJKB_00886at 908.591 kb on - strand, within OHPLBJKB_00886at 908.605 kb on + strand, within OHPLBJKB_00886at 908.605 kb on + strand, within OHPLBJKB_00886at 908.618 kb on - strand, within OHPLBJKB_00886at 908.618 kb on - strand, within OHPLBJKB_00886at 908.661 kb on + strand, within OHPLBJKB_00886at 908.661 kb on + strand, within OHPLBJKB_00886at 908.661 kb on + strand, within OHPLBJKB_00886at 908.666 kb on + strand, within OHPLBJKB_00886at 908.666 kb on + strand, within OHPLBJKB_00886at 908.667 kb on - strand, within OHPLBJKB_00886at 908.689 kb on - strand, within OHPLBJKB_00886at 908.701 kb on + strand, within OHPLBJKB_00886at 908.702 kb on - strand, within OHPLBJKB_00886at 908.723 kb on - strand, within OHPLBJKB_00886at 908.741 kb on + strand, within OHPLBJKB_00886at 908.768 kb on + strand, within OHPLBJKB_00886at 908.768 kb on + strand, within OHPLBJKB_00886at 908.768 kb on + strand, within OHPLBJKB_00886at 908.768 kb on + strand, within OHPLBJKB_00886at 908.768 kb on + strand, within OHPLBJKB_00886at 908.769 kb on - strand, within OHPLBJKB_00886at 908.769 kb on - strand, within OHPLBJKB_00886at 908.769 kb on - strand, within OHPLBJKB_00886at 908.776 kb on + strand, within OHPLBJKB_00886at 908.837 kb on + strand, within OHPLBJKB_00886at 908.865 kb on - strand, within OHPLBJKB_00886at 908.865 kb on - strand, within OHPLBJKB_00886at 908.865 kb on - strand, within OHPLBJKB_00886at 908.895 kb on + strand, within OHPLBJKB_00886at 908.895 kb on + strand, within OHPLBJKB_00886at 908.895 kb on + strand, within OHPLBJKB_00886at 908.895 kb on + strand, within OHPLBJKB_00886at 908.896 kb on - strand, within OHPLBJKB_00886at 908.896 kb on - strand, within OHPLBJKB_00886at 908.941 kb on + strand, within OHPLBJKB_00886at 908.951 kb on + strand, within OHPLBJKB_00886at 909.016 kb on + strand, within OHPLBJKB_00886at 909.068 kb on + strand, within OHPLBJKB_00886at 909.068 kb on + strand, within OHPLBJKB_00886at 909.068 kb on + strand, within OHPLBJKB_00886at 909.075 kb on - strand, within OHPLBJKB_00886at 909.152 kb on - strand, within OHPLBJKB_00886at 909.212 kb on + strandat 909.212 kb on + strandat 909.213 kb on - strandat 909.214 kb on + strandat 909.214 kb on + strandat 909.215 kb on - strandat 909.215 kb on - strandat 909.215 kb on - strandat 909.215 kb on - strandat 909.215 kb on - strandat 909.221 kb on - strandat 909.315 kb on + strandat 909.330 kb on - strandat 909.352 kb on - strandat 909.442 kb on - strand, within OHPLBJKB_00887at 909.442 kb on - strand, within OHPLBJKB_00887at 909.576 kb on + strand, within OHPLBJKB_00887at 909.594 kb on + strand, within OHPLBJKB_00887at 909.670 kb on - strand, within OHPLBJKB_00887at 909.680 kb on + strand, within OHPLBJKB_00887at 909.680 kb on + strand, within OHPLBJKB_00887at 909.681 kb on - strand, within OHPLBJKB_00887at 909.681 kb on - strand, within OHPLBJKB_00887at 909.742 kb on - strand, within OHPLBJKB_00887at 909.793 kb on + strand, within OHPLBJKB_00887at 909.793 kb on + strand, within OHPLBJKB_00887at 909.794 kb on - strand, within OHPLBJKB_00887at 909.794 kb on - strand, within OHPLBJKB_00887at 909.794 kb on - strand, within OHPLBJKB_00887at 909.794 kb on - strand, within OHPLBJKB_00887at 909.795 kb on + strand, within OHPLBJKB_00887at 909.796 kb on - strand, within OHPLBJKB_00887at 909.864 kb on + strand, within OHPLBJKB_00887at 909.864 kb on + strand, within OHPLBJKB_00887at 909.865 kb on - strand, within OHPLBJKB_00887at 909.871 kb on - strand, within OHPLBJKB_00887at 909.871 kb on - strand, within OHPLBJKB_00887at 909.890 kb on - strand, within OHPLBJKB_00887at 909.890 kb on - strand, within OHPLBJKB_00887at 909.917 kb on + strand, within OHPLBJKB_00887at 909.918 kb on - strand, within OHPLBJKB_00887at 909.918 kb on - strand, within OHPLBJKB_00887at 909.918 kb on - strand, within OHPLBJKB_00887at 910.034 kb on - strandat 910.045 kb on + strandat 910.046 kb on - strandat 910.047 kb on + strandat 910.047 kb on + strandat 910.047 kb on + strandat 910.048 kb on - strandat 910.048 kb on - strandat 910.048 kb on - strandat 910.081 kb on + strandat 910.095 kb on + strandat 910.096 kb on - strandat 910.101 kb on + strandat 910.102 kb on - strandat 910.131 kb on + strandat 910.177 kb on + strandat 910.369 kb on + strandat 910.370 kb on - strandat 910.370 kb on - strandat 910.370 kb on - strandat 910.406 kb on + strandat 910.406 kb on + strandat 910.407 kb on - strandat 910.407 kb on - strandat 910.407 kb on - strandat 910.407 kb on - strandat 910.457 kb on + strandat 910.458 kb on - strandat 910.463 kb on + strandat 910.463 kb on + strandat 910.463 kb on + strandat 910.463 kb on + strandat 910.463 kb on + strandat 910.464 kb on - strandat 910.464 kb on - strandat 910.464 kb on - strandat 910.501 kb on + strandat 910.501 kb on + strandat 910.501 kb on + strandat 910.522 kb on + strandat 910.595 kb on + strand, within OHPLBJKB_00888at 910.595 kb on + strand, within OHPLBJKB_00888at 910.596 kb on - strand, within OHPLBJKB_00888at 910.596 kb on - strand, within OHPLBJKB_00888at 910.596 kb on - strand, within OHPLBJKB_00888at 910.662 kb on - strand, within OHPLBJKB_00888at 910.662 kb on - strand, within OHPLBJKB_00888at 910.665 kb on + strand, within OHPLBJKB_00888at 910.665 kb on + strand, within OHPLBJKB_00888at 910.665 kb on + strand, within OHPLBJKB_00888at 910.666 kb on - strand, within OHPLBJKB_00888at 910.666 kb on - strand, within OHPLBJKB_00888at 910.706 kb on + strand, within OHPLBJKB_00888at 910.706 kb on + strand, within OHPLBJKB_00888at 910.706 kb on + strand, within OHPLBJKB_00888at 910.707 kb on - strand, within OHPLBJKB_00888at 910.707 kb on - strand, within OHPLBJKB_00888at 910.707 kb on - strand, within OHPLBJKB_00888at 910.707 kb on - strand, within OHPLBJKB_00888at 910.708 kb on + strand, within OHPLBJKB_00888at 910.733 kb on - strand, within OHPLBJKB_00888at 910.850 kb on + strand, within OHPLBJKB_00888at 910.850 kb on + strand, within OHPLBJKB_00888at 910.850 kb on + strand, within OHPLBJKB_00888at 910.851 kb on - strand, within OHPLBJKB_00888at 910.851 kb on - strand, within OHPLBJKB_00888at 910.851 kb on - strand, within OHPLBJKB_00888at 910.851 kb on - strand, within OHPLBJKB_00888at 910.854 kb on + strand, within OHPLBJKB_00888at 910.914 kb on + strand, within OHPLBJKB_00888at 910.914 kb on + strand, within OHPLBJKB_00888at 910.914 kb on + strand, within OHPLBJKB_00888at 910.914 kb on + strand, within OHPLBJKB_00888at 910.915 kb on - strand, within OHPLBJKB_00888at 910.915 kb on - strand, within OHPLBJKB_00888at 910.916 kb on + strand, within OHPLBJKB_00888at 911.030 kb on + strand, within OHPLBJKB_00888at 911.030 kb on + strand, within OHPLBJKB_00888at 911.030 kb on + strand, within OHPLBJKB_00888at 911.030 kb on + strand, within OHPLBJKB_00888at 911.031 kb on - strand, within OHPLBJKB_00888at 911.047 kb on + strand, within OHPLBJKB_00888at 911.048 kb on - strand, within OHPLBJKB_00888at 911.054 kb on + strand, within OHPLBJKB_00888at 911.054 kb on + strand, within OHPLBJKB_00888at 911.055 kb on - strand, within OHPLBJKB_00888at 911.055 kb on - strand, within OHPLBJKB_00888at 911.055 kb on - strand, within OHPLBJKB_00888at 911.066 kb on + strand, within OHPLBJKB_00888at 911.066 kb on + strand, within OHPLBJKB_00888

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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908,374 + +1.2
908,375 - +0.2
908,375 - -0.3
908,375 - -0.9
908,375 - +0.3
908,375 - +0.6
908,463 + -0.3
908,463 + +0.3
908,463 + +0.7
908,464 - -1.7
908,542 - OHPLBJKB_00886 0.10 -2.1
908,558 + OHPLBJKB_00886 0.12 +0.3
908,558 + OHPLBJKB_00886 0.12 +0.3
908,559 - OHPLBJKB_00886 0.12 +0.3
908,559 - OHPLBJKB_00886 0.12 -1.0
908,559 - OHPLBJKB_00886 0.12 +0.3
908,559 - OHPLBJKB_00886 0.12 +1.2
908,591 - OHPLBJKB_00886 0.16 -1.2
908,591 - OHPLBJKB_00886 0.16 -1.5
908,605 + OHPLBJKB_00886 0.18 -0.5
908,605 + OHPLBJKB_00886 0.18 -0.9
908,618 - OHPLBJKB_00886 0.19 -0.1
908,618 - OHPLBJKB_00886 0.19 +0.3
908,661 + OHPLBJKB_00886 0.24 -0.3
908,661 + OHPLBJKB_00886 0.24 -0.2
908,661 + OHPLBJKB_00886 0.24 -0.7
908,666 + OHPLBJKB_00886 0.25 -0.9
908,666 + OHPLBJKB_00886 0.25 -0.0
908,667 - OHPLBJKB_00886 0.25 +0.4
908,689 - OHPLBJKB_00886 0.28 -1.9
908,701 + OHPLBJKB_00886 0.29 +0.6
908,702 - OHPLBJKB_00886 0.29 +0.7
908,723 - OHPLBJKB_00886 0.32 -0.1
908,741 + OHPLBJKB_00886 0.34 +0.7
908,768 + OHPLBJKB_00886 0.37 +0.1
908,768 + OHPLBJKB_00886 0.37 -0.3
908,768 + OHPLBJKB_00886 0.37 -0.2
908,768 + OHPLBJKB_00886 0.37 +0.0
908,768 + OHPLBJKB_00886 0.37 -0.6
908,769 - OHPLBJKB_00886 0.37 +0.0
908,769 - OHPLBJKB_00886 0.37 -1.5
908,769 - OHPLBJKB_00886 0.37 -0.1
908,776 + OHPLBJKB_00886 0.38 +1.5
908,837 + OHPLBJKB_00886 0.46 +0.1
908,865 - OHPLBJKB_00886 0.49 +0.2
908,865 - OHPLBJKB_00886 0.49 +1.9
908,865 - OHPLBJKB_00886 0.49 +0.6
908,895 + OHPLBJKB_00886 0.52 -0.9
908,895 + OHPLBJKB_00886 0.52 -0.2
908,895 + OHPLBJKB_00886 0.52 -0.9
908,895 + OHPLBJKB_00886 0.52 +0.2
908,896 - OHPLBJKB_00886 0.53 +0.2
908,896 - OHPLBJKB_00886 0.53 -0.3
908,941 + OHPLBJKB_00886 0.58 +0.6
908,951 + OHPLBJKB_00886 0.59 -0.4
909,016 + OHPLBJKB_00886 0.67 +0.8
909,068 + OHPLBJKB_00886 0.73 +0.0
909,068 + OHPLBJKB_00886 0.73 -0.4
909,068 + OHPLBJKB_00886 0.73 -0.9
909,075 - OHPLBJKB_00886 0.74 +0.8
909,152 - OHPLBJKB_00886 0.83 -0.7
909,212 + -0.3
909,212 + -1.4
909,213 - -0.7
909,214 + +0.6
909,214 + -1.4
909,215 - -0.6
909,215 - +0.4
909,215 - -1.2
909,215 - -0.1
909,215 - +0.2
909,221 - -0.5
909,315 + -1.3
909,330 - -0.3
909,352 - -0.3
909,442 - OHPLBJKB_00887 0.16 -0.5
909,442 - OHPLBJKB_00887 0.16 -0.5
909,576 + OHPLBJKB_00887 0.33 +1.1
909,594 + OHPLBJKB_00887 0.36 -2.2
909,670 - OHPLBJKB_00887 0.46 -0.4
909,680 + OHPLBJKB_00887 0.47 -0.6
909,680 + OHPLBJKB_00887 0.47 +0.3
909,681 - OHPLBJKB_00887 0.47 -0.2
909,681 - OHPLBJKB_00887 0.47 -0.3
909,742 - OHPLBJKB_00887 0.55 +0.9
909,793 + OHPLBJKB_00887 0.62 +1.2
909,793 + OHPLBJKB_00887 0.62 +0.9
909,794 - OHPLBJKB_00887 0.62 +0.0
909,794 - OHPLBJKB_00887 0.62 -0.2
909,794 - OHPLBJKB_00887 0.62 -0.6
909,794 - OHPLBJKB_00887 0.62 +0.2
909,795 + OHPLBJKB_00887 0.62 -0.5
909,796 - OHPLBJKB_00887 0.62 +0.2
909,864 + OHPLBJKB_00887 0.71 +0.8
909,864 + OHPLBJKB_00887 0.71 +0.1
909,865 - OHPLBJKB_00887 0.71 +0.3
909,871 - OHPLBJKB_00887 0.72 -0.4
909,871 - OHPLBJKB_00887 0.72 +0.8
909,890 - OHPLBJKB_00887 0.75 +0.1
909,890 - OHPLBJKB_00887 0.75 +0.6
909,917 + OHPLBJKB_00887 0.78 +0.1
909,918 - OHPLBJKB_00887 0.78 -0.1
909,918 - OHPLBJKB_00887 0.78 +0.5
909,918 - OHPLBJKB_00887 0.78 +1.2
910,034 - -0.3
910,045 + +0.3
910,046 - +0.2
910,047 + -0.1
910,047 + +0.4
910,047 + -0.2
910,048 - +1.1
910,048 - +0.1
910,048 - -0.4
910,081 + -0.1
910,095 + -0.8
910,096 - +0.5
910,101 + +1.0
910,102 - +1.8
910,131 + +0.1
910,177 + -2.3
910,369 + -0.4
910,370 - -0.2
910,370 - +0.2
910,370 - +0.2
910,406 + -2.0
910,406 + -0.5
910,407 - +0.8
910,407 - +0.2
910,407 - +0.1
910,407 - -1.2
910,457 + -0.3
910,458 - -0.1
910,463 + -2.1
910,463 + +0.2
910,463 + -2.0
910,463 + +0.2
910,463 + -0.4
910,464 - -0.5
910,464 - -0.6
910,464 - +0.7
910,501 + +1.5
910,501 + +0.5
910,501 + -0.1
910,522 + +0.1
910,595 + OHPLBJKB_00888 0.14 -0.3
910,595 + OHPLBJKB_00888 0.14 +0.3
910,596 - OHPLBJKB_00888 0.14 -0.3
910,596 - OHPLBJKB_00888 0.14 -0.4
910,596 - OHPLBJKB_00888 0.14 +0.4
910,662 - OHPLBJKB_00888 0.19 -0.3
910,662 - OHPLBJKB_00888 0.19 +0.4
910,665 + OHPLBJKB_00888 0.19 +0.9
910,665 + OHPLBJKB_00888 0.19 -1.7
910,665 + OHPLBJKB_00888 0.19 -0.4
910,666 - OHPLBJKB_00888 0.19 -0.6
910,666 - OHPLBJKB_00888 0.19 -0.2
910,706 + OHPLBJKB_00888 0.22 +0.3
910,706 + OHPLBJKB_00888 0.22 +0.6
910,706 + OHPLBJKB_00888 0.22 -0.7
910,707 - OHPLBJKB_00888 0.22 -0.4
910,707 - OHPLBJKB_00888 0.22 +0.5
910,707 - OHPLBJKB_00888 0.22 +0.1
910,707 - OHPLBJKB_00888 0.22 +0.2
910,708 + OHPLBJKB_00888 0.22 -3.0
910,733 - OHPLBJKB_00888 0.24 -0.0
910,850 + OHPLBJKB_00888 0.32 -0.6
910,850 + OHPLBJKB_00888 0.32 -1.7
910,850 + OHPLBJKB_00888 0.32 +0.5
910,851 - OHPLBJKB_00888 0.32 +0.3
910,851 - OHPLBJKB_00888 0.32 -0.8
910,851 - OHPLBJKB_00888 0.32 -0.7
910,851 - OHPLBJKB_00888 0.32 +0.6
910,854 + OHPLBJKB_00888 0.32 -0.2
910,914 + OHPLBJKB_00888 0.36 -1.0
910,914 + OHPLBJKB_00888 0.36 -0.8
910,914 + OHPLBJKB_00888 0.36 -0.1
910,914 + OHPLBJKB_00888 0.36 -0.5
910,915 - OHPLBJKB_00888 0.36 -0.6
910,915 - OHPLBJKB_00888 0.36 -0.8
910,916 + OHPLBJKB_00888 0.37 +0.5
911,030 + OHPLBJKB_00888 0.45 +0.5
911,030 + OHPLBJKB_00888 0.45 +0.1
911,030 + OHPLBJKB_00888 0.45 -1.1
911,030 + OHPLBJKB_00888 0.45 +0.2
911,031 - OHPLBJKB_00888 0.45 -0.4
911,047 + OHPLBJKB_00888 0.46 -0.4
911,048 - OHPLBJKB_00888 0.46 +0.1
911,054 + OHPLBJKB_00888 0.46 -1.7
911,054 + OHPLBJKB_00888 0.46 +0.3
911,055 - OHPLBJKB_00888 0.46 +0.8
911,055 - OHPLBJKB_00888 0.46 +0.4
911,055 - OHPLBJKB_00888 0.46 -1.0
911,066 + OHPLBJKB_00888 0.47 +0.4
911,066 + OHPLBJKB_00888 0.47 +0.2

Or see this region's nucleotide sequence