Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00109

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00107 and OHPLBJKB_00108 are separated by 47 nucleotidesOHPLBJKB_00108 and OHPLBJKB_00109 are separated by 20 nucleotidesOHPLBJKB_00109 and OHPLBJKB_00110 are separated by 8 nucleotidesOHPLBJKB_00110 and OHPLBJKB_00111 are separated by 228 nucleotides OHPLBJKB_00107: OHPLBJKB_00107 - hypothetical protein, at 116,205 to 117,143 _00107 OHPLBJKB_00108: OHPLBJKB_00108 - Protein YibA, at 117,191 to 118,033 _00108 OHPLBJKB_00109: OHPLBJKB_00109 - hypothetical protein, at 118,054 to 119,142 _00109 OHPLBJKB_00110: OHPLBJKB_00110 - Protein RhsC, at 119,151 to 119,414 _00110 OHPLBJKB_00111: OHPLBJKB_00111 - putative GST-like protein YibF, at 119,643 to 120,251 _00111 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 117.179 kb on - strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.257 kb on - strandat 117.259 kb on + strandat 117.259 kb on + strandat 117.263 kb on + strandat 117.263 kb on + strandat 117.472 kb on - strand, within OHPLBJKB_00108at 117.608 kb on - strand, within OHPLBJKB_00108at 118.150 kb on + strandat 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.210 kb on + strand, within OHPLBJKB_00109at 118.211 kb on - strand, within OHPLBJKB_00109at 118.211 kb on - strand, within OHPLBJKB_00109at 118.213 kb on + strand, within OHPLBJKB_00109at 118.213 kb on + strand, within OHPLBJKB_00109at 118.267 kb on + strand, within OHPLBJKB_00109at 118.276 kb on + strand, within OHPLBJKB_00109at 118.277 kb on - strand, within OHPLBJKB_00109at 118.277 kb on - strand, within OHPLBJKB_00109at 118.279 kb on - strand, within OHPLBJKB_00109at 118.282 kb on + strand, within OHPLBJKB_00109at 118.282 kb on + strand, within OHPLBJKB_00109at 118.283 kb on - strand, within OHPLBJKB_00109at 118.283 kb on - strand, within OHPLBJKB_00109at 118.283 kb on - strand, within OHPLBJKB_00109at 118.283 kb on - strand, within OHPLBJKB_00109at 118.288 kb on + strand, within OHPLBJKB_00109at 118.309 kb on + strand, within OHPLBJKB_00109at 118.310 kb on - strand, within OHPLBJKB_00109at 118.339 kb on - strand, within OHPLBJKB_00109at 118.339 kb on - strand, within OHPLBJKB_00109at 118.465 kb on - strand, within OHPLBJKB_00109at 118.465 kb on - strand, within OHPLBJKB_00109at 118.560 kb on - strand, within OHPLBJKB_00109at 118.560 kb on - strand, within OHPLBJKB_00109at 118.578 kb on - strand, within OHPLBJKB_00109at 118.578 kb on - strand, within OHPLBJKB_00109at 118.578 kb on - strand, within OHPLBJKB_00109at 118.601 kb on + strand, within OHPLBJKB_00109at 118.602 kb on - strand, within OHPLBJKB_00109at 118.679 kb on + strand, within OHPLBJKB_00109at 118.679 kb on + strand, within OHPLBJKB_00109at 118.751 kb on + strand, within OHPLBJKB_00109at 118.751 kb on + strand, within OHPLBJKB_00109at 118.779 kb on - strand, within OHPLBJKB_00109at 118.779 kb on - strand, within OHPLBJKB_00109at 119.183 kb on - strand, within OHPLBJKB_00110at 119.183 kb on - strand, within OHPLBJKB_00110at 119.473 kb on + strandat 119.475 kb on + strandat 119.475 kb on + strandat 119.475 kb on + strandat 119.476 kb on - strandat 119.486 kb on + strandat 119.486 kb on + strandat 119.487 kb on - strandat 119.487 kb on - strandat 119.487 kb on - strandat 119.532 kb on - strandat 119.545 kb on + strandat 119.554 kb on + strandat 119.555 kb on - strandat 119.564 kb on + strandat 119.661 kb on + strandat 119.661 kb on + strandat 119.662 kb on - strandat 119.702 kb on - strandat 119.713 kb on + strand, within OHPLBJKB_00111at 119.726 kb on + strand, within OHPLBJKB_00111at 119.726 kb on + strand, within OHPLBJKB_00111at 119.727 kb on - strand, within OHPLBJKB_00111at 119.742 kb on + strand, within OHPLBJKB_00111at 119.743 kb on - strand, within OHPLBJKB_00111at 119.743 kb on - strand, within OHPLBJKB_00111at 119.743 kb on - strand, within OHPLBJKB_00111at 119.847 kb on + strand, within OHPLBJKB_00111at 119.848 kb on - strand, within OHPLBJKB_00111at 119.848 kb on - strand, within OHPLBJKB_00111at 119.848 kb on - strand, within OHPLBJKB_00111at 119.850 kb on - strand, within OHPLBJKB_00111at 119.850 kb on - strand, within OHPLBJKB_00111at 119.942 kb on + strand, within OHPLBJKB_00111at 119.942 kb on + strand, within OHPLBJKB_00111at 120.013 kb on + strand, within OHPLBJKB_00111

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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117,179 - +0.2
117,256 + -0.1
117,256 + +0.9
117,256 + +0.4
117,256 + +0.5
117,256 + +0.3
117,257 - -0.2
117,259 + -1.6
117,259 + -0.4
117,263 + +0.7
117,263 + +1.6
117,472 - OHPLBJKB_00108 0.33 +1.9
117,608 - OHPLBJKB_00108 0.49 -0.8
118,150 + -0.3
118,210 + OHPLBJKB_00109 0.14 -0.8
118,210 + OHPLBJKB_00109 0.14 -0.4
118,210 + OHPLBJKB_00109 0.14 -0.9
118,210 + OHPLBJKB_00109 0.14 +0.5
118,210 + OHPLBJKB_00109 0.14 -0.6
118,210 + OHPLBJKB_00109 0.14 -0.4
118,210 + OHPLBJKB_00109 0.14 +0.4
118,211 - OHPLBJKB_00109 0.14 +0.0
118,211 - OHPLBJKB_00109 0.14 -0.4
118,213 + OHPLBJKB_00109 0.15 +0.8
118,213 + OHPLBJKB_00109 0.15 +1.0
118,267 + OHPLBJKB_00109 0.20 +0.1
118,276 + OHPLBJKB_00109 0.20 +0.3
118,277 - OHPLBJKB_00109 0.20 -0.2
118,277 - OHPLBJKB_00109 0.20 -0.5
118,279 - OHPLBJKB_00109 0.21 +0.3
118,282 + OHPLBJKB_00109 0.21 +0.0
118,282 + OHPLBJKB_00109 0.21 +0.9
118,283 - OHPLBJKB_00109 0.21 +1.8
118,283 - OHPLBJKB_00109 0.21 +0.5
118,283 - OHPLBJKB_00109 0.21 -0.1
118,283 - OHPLBJKB_00109 0.21 +0.8
118,288 + OHPLBJKB_00109 0.21 +0.6
118,309 + OHPLBJKB_00109 0.23 -0.2
118,310 - OHPLBJKB_00109 0.24 +0.2
118,339 - OHPLBJKB_00109 0.26 +0.4
118,339 - OHPLBJKB_00109 0.26 +1.5
118,465 - OHPLBJKB_00109 0.38 -1.6
118,465 - OHPLBJKB_00109 0.38 -0.4
118,560 - OHPLBJKB_00109 0.46 +0.8
118,560 - OHPLBJKB_00109 0.46 -0.1
118,578 - OHPLBJKB_00109 0.48 +0.3
118,578 - OHPLBJKB_00109 0.48 -0.4
118,578 - OHPLBJKB_00109 0.48 -2.0
118,601 + OHPLBJKB_00109 0.50 +0.1
118,602 - OHPLBJKB_00109 0.50 -0.1
118,679 + OHPLBJKB_00109 0.57 +0.2
118,679 + OHPLBJKB_00109 0.57 -0.6
118,751 + OHPLBJKB_00109 0.64 +1.9
118,751 + OHPLBJKB_00109 0.64 -1.9
118,779 - OHPLBJKB_00109 0.67 +0.1
118,779 - OHPLBJKB_00109 0.67 +0.3
119,183 - OHPLBJKB_00110 0.12 -0.6
119,183 - OHPLBJKB_00110 0.12 -0.4
119,473 + -0.6
119,475 + +0.5
119,475 + -1.2
119,475 + -0.3
119,476 - -0.1
119,486 + +0.6
119,486 + +0.3
119,487 - +0.1
119,487 - +0.2
119,487 - +1.0
119,532 - -0.6
119,545 + +1.1
119,554 + -1.3
119,555 - +1.0
119,564 + -0.1
119,661 + -0.2
119,661 + -0.2
119,662 - +0.0
119,702 - +1.1
119,713 + OHPLBJKB_00111 0.11 -0.2
119,726 + OHPLBJKB_00111 0.14 -0.7
119,726 + OHPLBJKB_00111 0.14 +0.1
119,727 - OHPLBJKB_00111 0.14 +0.3
119,742 + OHPLBJKB_00111 0.16 +0.9
119,743 - OHPLBJKB_00111 0.16 -0.6
119,743 - OHPLBJKB_00111 0.16 -0.0
119,743 - OHPLBJKB_00111 0.16 -0.3
119,847 + OHPLBJKB_00111 0.33 -0.5
119,848 - OHPLBJKB_00111 0.34 -0.4
119,848 - OHPLBJKB_00111 0.34 +1.9
119,848 - OHPLBJKB_00111 0.34 +0.2
119,850 - OHPLBJKB_00111 0.34 -0.9
119,850 - OHPLBJKB_00111 0.34 +0.7
119,942 + OHPLBJKB_00111 0.49 +0.5
119,942 + OHPLBJKB_00111 0.49 -0.5
120,013 + OHPLBJKB_00111 0.61 -0.4

Or see this region's nucleotide sequence