Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04107

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04105 and OHPLBJKB_04106 are separated by 309 nucleotidesOHPLBJKB_04106 and OHPLBJKB_04107 are separated by 26 nucleotidesOHPLBJKB_04107 and OHPLBJKB_04108 are separated by 92 nucleotides OHPLBJKB_04105: OHPLBJKB_04105 - IS110 family transposase IS621, at 4,318,419 to 4,319,399 _04105 OHPLBJKB_04106: OHPLBJKB_04106 - hypothetical protein, at 4,319,709 to 4,320,326 _04106 OHPLBJKB_04107: OHPLBJKB_04107 - putative cystine transporter YijE, at 4,320,353 to 4,321,258 _04107 OHPLBJKB_04108: OHPLBJKB_04108 - Catalase-peroxidase, at 4,321,351 to 4,323,531 _04108 Position (kb) 4320 4321 4322Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4319.502 kb on + strandat 4319.690 kb on - strandat 4319.795 kb on - strand, within OHPLBJKB_04106at 4319.861 kb on - strand, within OHPLBJKB_04106at 4319.865 kb on + strand, within OHPLBJKB_04106at 4319.865 kb on + strand, within OHPLBJKB_04106at 4319.866 kb on - strand, within OHPLBJKB_04106at 4319.878 kb on - strand, within OHPLBJKB_04106at 4319.888 kb on + strand, within OHPLBJKB_04106at 4319.888 kb on + strand, within OHPLBJKB_04106at 4319.888 kb on + strand, within OHPLBJKB_04106at 4319.889 kb on - strand, within OHPLBJKB_04106at 4319.889 kb on - strand, within OHPLBJKB_04106at 4319.889 kb on - strand, within OHPLBJKB_04106at 4319.889 kb on - strand, within OHPLBJKB_04106at 4319.889 kb on - strand, within OHPLBJKB_04106at 4319.889 kb on - strand, within OHPLBJKB_04106at 4319.926 kb on + strand, within OHPLBJKB_04106at 4319.926 kb on + strand, within OHPLBJKB_04106at 4319.926 kb on + strand, within OHPLBJKB_04106at 4319.926 kb on + strand, within OHPLBJKB_04106at 4319.926 kb on + strand, within OHPLBJKB_04106at 4319.927 kb on - strand, within OHPLBJKB_04106at 4319.927 kb on - strand, within OHPLBJKB_04106at 4319.927 kb on - strand, within OHPLBJKB_04106at 4319.997 kb on - strand, within OHPLBJKB_04106at 4320.037 kb on + strand, within OHPLBJKB_04106at 4320.038 kb on - strand, within OHPLBJKB_04106at 4320.038 kb on - strand, within OHPLBJKB_04106at 4320.077 kb on + strand, within OHPLBJKB_04106at 4320.107 kb on + strand, within OHPLBJKB_04106at 4320.107 kb on + strand, within OHPLBJKB_04106at 4320.108 kb on - strand, within OHPLBJKB_04106at 4320.108 kb on - strand, within OHPLBJKB_04106at 4320.191 kb on + strand, within OHPLBJKB_04106at 4320.191 kb on + strand, within OHPLBJKB_04106at 4320.192 kb on - strand, within OHPLBJKB_04106at 4320.241 kb on + strand, within OHPLBJKB_04106at 4320.241 kb on + strand, within OHPLBJKB_04106at 4320.241 kb on + strand, within OHPLBJKB_04106at 4320.241 kb on + strand, within OHPLBJKB_04106at 4320.242 kb on - strand, within OHPLBJKB_04106at 4320.242 kb on - strand, within OHPLBJKB_04106at 4320.242 kb on - strand, within OHPLBJKB_04106at 4320.245 kb on + strand, within OHPLBJKB_04106at 4320.245 kb on + strand, within OHPLBJKB_04106at 4320.245 kb on + strand, within OHPLBJKB_04106at 4320.245 kb on + strand, within OHPLBJKB_04106at 4320.245 kb on + strand, within OHPLBJKB_04106at 4320.245 kb on + strand, within OHPLBJKB_04106at 4320.246 kb on - strand, within OHPLBJKB_04106at 4320.246 kb on - strand, within OHPLBJKB_04106at 4320.246 kb on - strand, within OHPLBJKB_04106at 4320.246 kb on - strand, within OHPLBJKB_04106at 4320.246 kb on - strand, within OHPLBJKB_04106at 4320.285 kb on - strandat 4320.324 kb on + strandat 4320.324 kb on + strandat 4320.325 kb on - strandat 4320.325 kb on - strandat 4320.325 kb on - strandat 4320.325 kb on - strandat 4320.366 kb on - strandat 4320.427 kb on + strandat 4320.433 kb on + strandat 4320.482 kb on + strand, within OHPLBJKB_04107at 4320.482 kb on + strand, within OHPLBJKB_04107at 4320.512 kb on + strand, within OHPLBJKB_04107at 4320.512 kb on + strand, within OHPLBJKB_04107at 4320.513 kb on - strand, within OHPLBJKB_04107at 4320.523 kb on + strand, within OHPLBJKB_04107at 4320.557 kb on + strand, within OHPLBJKB_04107at 4320.558 kb on - strand, within OHPLBJKB_04107at 4320.558 kb on - strand, within OHPLBJKB_04107at 4320.595 kb on - strand, within OHPLBJKB_04107at 4320.651 kb on - strand, within OHPLBJKB_04107at 4320.681 kb on + strand, within OHPLBJKB_04107at 4320.682 kb on - strand, within OHPLBJKB_04107at 4320.710 kb on + strand, within OHPLBJKB_04107at 4320.710 kb on + strand, within OHPLBJKB_04107at 4320.710 kb on + strand, within OHPLBJKB_04107at 4320.711 kb on - strand, within OHPLBJKB_04107at 4320.735 kb on + strand, within OHPLBJKB_04107at 4320.735 kb on + strand, within OHPLBJKB_04107at 4320.735 kb on + strand, within OHPLBJKB_04107at 4320.735 kb on + strand, within OHPLBJKB_04107at 4320.735 kb on + strand, within OHPLBJKB_04107at 4320.745 kb on + strand, within OHPLBJKB_04107at 4320.848 kb on + strand, within OHPLBJKB_04107at 4320.946 kb on + strand, within OHPLBJKB_04107at 4320.947 kb on - strand, within OHPLBJKB_04107at 4320.948 kb on + strand, within OHPLBJKB_04107at 4320.948 kb on + strand, within OHPLBJKB_04107at 4320.949 kb on - strand, within OHPLBJKB_04107at 4320.949 kb on - strand, within OHPLBJKB_04107at 4320.949 kb on - strand, within OHPLBJKB_04107at 4320.949 kb on - strand, within OHPLBJKB_04107at 4320.949 kb on - strand, within OHPLBJKB_04107at 4320.949 kb on - strand, within OHPLBJKB_04107at 4321.025 kb on + strand, within OHPLBJKB_04107at 4321.026 kb on - strand, within OHPLBJKB_04107at 4321.040 kb on + strand, within OHPLBJKB_04107at 4321.040 kb on + strand, within OHPLBJKB_04107at 4321.047 kb on + strand, within OHPLBJKB_04107at 4321.047 kb on + strand, within OHPLBJKB_04107at 4321.048 kb on - strand, within OHPLBJKB_04107at 4321.048 kb on - strand, within OHPLBJKB_04107at 4321.051 kb on + strand, within OHPLBJKB_04107at 4321.052 kb on - strand, within OHPLBJKB_04107at 4321.082 kb on + strand, within OHPLBJKB_04107at 4321.082 kb on + strand, within OHPLBJKB_04107at 4321.082 kb on + strand, within OHPLBJKB_04107at 4321.082 kb on + strand, within OHPLBJKB_04107at 4321.083 kb on - strand, within OHPLBJKB_04107at 4321.083 kb on - strand, within OHPLBJKB_04107at 4321.083 kb on - strand, within OHPLBJKB_04107at 4321.083 kb on - strand, within OHPLBJKB_04107at 4321.086 kb on - strand, within OHPLBJKB_04107at 4321.086 kb on - strand, within OHPLBJKB_04107at 4321.100 kb on + strand, within OHPLBJKB_04107at 4321.100 kb on + strand, within OHPLBJKB_04107at 4321.155 kb on + strand, within OHPLBJKB_04107at 4321.156 kb on - strand, within OHPLBJKB_04107at 4321.156 kb on - strand, within OHPLBJKB_04107at 4321.156 kb on - strand, within OHPLBJKB_04107at 4321.156 kb on - strand, within OHPLBJKB_04107at 4321.186 kb on + strandat 4321.186 kb on + strandat 4321.186 kb on + strandat 4321.186 kb on + strandat 4321.186 kb on + strandat 4321.188 kb on + strandat 4321.188 kb on + strandat 4321.189 kb on - strandat 4321.189 kb on - strandat 4321.189 kb on - strandat 4321.198 kb on + strandat 4321.199 kb on - strandat 4321.294 kb on + strandat 4321.294 kb on + strandat 4321.294 kb on + strandat 4321.295 kb on - strandat 4321.295 kb on - strandat 4321.410 kb on + strandat 4321.411 kb on - strandat 4321.473 kb on + strandat 4321.473 kb on + strandat 4321.787 kb on + strand, within OHPLBJKB_04108at 4321.788 kb on - strand, within OHPLBJKB_04108at 4321.788 kb on - strand, within OHPLBJKB_04108at 4321.945 kb on + strand, within OHPLBJKB_04108at 4321.946 kb on - strand, within OHPLBJKB_04108at 4321.968 kb on + strand, within OHPLBJKB_04108at 4322.103 kb on + strand, within OHPLBJKB_04108at 4322.139 kb on + strand, within OHPLBJKB_04108at 4322.204 kb on + strand, within OHPLBJKB_04108at 4322.204 kb on + strand, within OHPLBJKB_04108at 4322.204 kb on + strand, within OHPLBJKB_04108at 4322.204 kb on + strand, within OHPLBJKB_04108at 4322.204 kb on + strand, within OHPLBJKB_04108at 4322.205 kb on - strand, within OHPLBJKB_04108at 4322.205 kb on - strand, within OHPLBJKB_04108at 4322.205 kb on - strand, within OHPLBJKB_04108

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,319,502 + +0.2
4,319,690 - -1.1
4,319,795 - OHPLBJKB_04106 0.14 -1.2
4,319,861 - OHPLBJKB_04106 0.25 +1.4
4,319,865 + OHPLBJKB_04106 0.25 +0.4
4,319,865 + OHPLBJKB_04106 0.25 -0.5
4,319,866 - OHPLBJKB_04106 0.25 +0.4
4,319,878 - OHPLBJKB_04106 0.27 +1.4
4,319,888 + OHPLBJKB_04106 0.29 -0.3
4,319,888 + OHPLBJKB_04106 0.29 +0.0
4,319,888 + OHPLBJKB_04106 0.29 +1.2
4,319,889 - OHPLBJKB_04106 0.29 +3.0
4,319,889 - OHPLBJKB_04106 0.29 -0.3
4,319,889 - OHPLBJKB_04106 0.29 -0.8
4,319,889 - OHPLBJKB_04106 0.29 -1.4
4,319,889 - OHPLBJKB_04106 0.29 +0.8
4,319,889 - OHPLBJKB_04106 0.29 -0.7
4,319,926 + OHPLBJKB_04106 0.35 -0.4
4,319,926 + OHPLBJKB_04106 0.35 -1.1
4,319,926 + OHPLBJKB_04106 0.35 -0.2
4,319,926 + OHPLBJKB_04106 0.35 +1.3
4,319,926 + OHPLBJKB_04106 0.35 +0.3
4,319,927 - OHPLBJKB_04106 0.35 -0.2
4,319,927 - OHPLBJKB_04106 0.35 +0.2
4,319,927 - OHPLBJKB_04106 0.35 -0.4
4,319,997 - OHPLBJKB_04106 0.47 -0.1
4,320,037 + OHPLBJKB_04106 0.53 +0.2
4,320,038 - OHPLBJKB_04106 0.53 +0.2
4,320,038 - OHPLBJKB_04106 0.53 +1.4
4,320,077 + OHPLBJKB_04106 0.60 +1.3
4,320,107 + OHPLBJKB_04106 0.64 -0.2
4,320,107 + OHPLBJKB_04106 0.64 -0.1
4,320,108 - OHPLBJKB_04106 0.65 -0.3
4,320,108 - OHPLBJKB_04106 0.65 -1.1
4,320,191 + OHPLBJKB_04106 0.78 +0.7
4,320,191 + OHPLBJKB_04106 0.78 +0.8
4,320,192 - OHPLBJKB_04106 0.78 +0.5
4,320,241 + OHPLBJKB_04106 0.86 +0.6
4,320,241 + OHPLBJKB_04106 0.86 +0.3
4,320,241 + OHPLBJKB_04106 0.86 +2.0
4,320,241 + OHPLBJKB_04106 0.86 -0.8
4,320,242 - OHPLBJKB_04106 0.86 -0.9
4,320,242 - OHPLBJKB_04106 0.86 -0.5
4,320,242 - OHPLBJKB_04106 0.86 +1.8
4,320,245 + OHPLBJKB_04106 0.87 +5.0
4,320,245 + OHPLBJKB_04106 0.87 -0.1
4,320,245 + OHPLBJKB_04106 0.87 -0.5
4,320,245 + OHPLBJKB_04106 0.87 -0.2
4,320,245 + OHPLBJKB_04106 0.87 +0.4
4,320,245 + OHPLBJKB_04106 0.87 -0.1
4,320,246 - OHPLBJKB_04106 0.87 +0.9
4,320,246 - OHPLBJKB_04106 0.87 +0.2
4,320,246 - OHPLBJKB_04106 0.87 -1.0
4,320,246 - OHPLBJKB_04106 0.87 +0.2
4,320,246 - OHPLBJKB_04106 0.87 +0.7
4,320,285 - +0.5
4,320,324 + -0.1
4,320,324 + -1.3
4,320,325 - -0.8
4,320,325 - +1.6
4,320,325 - +0.6
4,320,325 - +0.1
4,320,366 - +0.3
4,320,427 + +0.3
4,320,433 + -0.9
4,320,482 + OHPLBJKB_04107 0.14 +1.4
4,320,482 + OHPLBJKB_04107 0.14 -0.2
4,320,512 + OHPLBJKB_04107 0.18 +0.3
4,320,512 + OHPLBJKB_04107 0.18 +0.2
4,320,513 - OHPLBJKB_04107 0.18 -1.8
4,320,523 + OHPLBJKB_04107 0.19 +1.0
4,320,557 + OHPLBJKB_04107 0.23 +0.5
4,320,558 - OHPLBJKB_04107 0.23 +0.4
4,320,558 - OHPLBJKB_04107 0.23 -0.2
4,320,595 - OHPLBJKB_04107 0.27 -0.4
4,320,651 - OHPLBJKB_04107 0.33 -2.0
4,320,681 + OHPLBJKB_04107 0.36 +0.6
4,320,682 - OHPLBJKB_04107 0.36 -0.6
4,320,710 + OHPLBJKB_04107 0.39 +0.2
4,320,710 + OHPLBJKB_04107 0.39 +0.8
4,320,710 + OHPLBJKB_04107 0.39 +4.7
4,320,711 - OHPLBJKB_04107 0.40 +0.1
4,320,735 + OHPLBJKB_04107 0.42 +1.5
4,320,735 + OHPLBJKB_04107 0.42 -1.0
4,320,735 + OHPLBJKB_04107 0.42 -0.3
4,320,735 + OHPLBJKB_04107 0.42 +1.4
4,320,735 + OHPLBJKB_04107 0.42 -1.1
4,320,745 + OHPLBJKB_04107 0.43 +0.1
4,320,848 + OHPLBJKB_04107 0.55 +1.2
4,320,946 + OHPLBJKB_04107 0.65 -0.8
4,320,947 - OHPLBJKB_04107 0.66 +0.2
4,320,948 + OHPLBJKB_04107 0.66 -1.5
4,320,948 + OHPLBJKB_04107 0.66 +0.3
4,320,949 - OHPLBJKB_04107 0.66 +1.4
4,320,949 - OHPLBJKB_04107 0.66 +0.4
4,320,949 - OHPLBJKB_04107 0.66 +1.1
4,320,949 - OHPLBJKB_04107 0.66 +0.3
4,320,949 - OHPLBJKB_04107 0.66 +1.5
4,320,949 - OHPLBJKB_04107 0.66 +0.7
4,321,025 + OHPLBJKB_04107 0.74 +1.0
4,321,026 - OHPLBJKB_04107 0.74 +1.1
4,321,040 + OHPLBJKB_04107 0.76 +1.0
4,321,040 + OHPLBJKB_04107 0.76 +1.8
4,321,047 + OHPLBJKB_04107 0.77 +0.7
4,321,047 + OHPLBJKB_04107 0.77 +1.7
4,321,048 - OHPLBJKB_04107 0.77 -0.5
4,321,048 - OHPLBJKB_04107 0.77 -0.7
4,321,051 + OHPLBJKB_04107 0.77 -0.9
4,321,052 - OHPLBJKB_04107 0.77 +0.3
4,321,082 + OHPLBJKB_04107 0.80 -0.1
4,321,082 + OHPLBJKB_04107 0.80 -1.3
4,321,082 + OHPLBJKB_04107 0.80 -1.0
4,321,082 + OHPLBJKB_04107 0.80 +0.9
4,321,083 - OHPLBJKB_04107 0.81 +0.0
4,321,083 - OHPLBJKB_04107 0.81 +0.7
4,321,083 - OHPLBJKB_04107 0.81 -2.2
4,321,083 - OHPLBJKB_04107 0.81 -0.3
4,321,086 - OHPLBJKB_04107 0.81 +0.2
4,321,086 - OHPLBJKB_04107 0.81 -1.5
4,321,100 + OHPLBJKB_04107 0.82 -0.7
4,321,100 + OHPLBJKB_04107 0.82 +0.4
4,321,155 + OHPLBJKB_04107 0.89 +0.9
4,321,156 - OHPLBJKB_04107 0.89 +0.3
4,321,156 - OHPLBJKB_04107 0.89 +0.9
4,321,156 - OHPLBJKB_04107 0.89 +1.7
4,321,156 - OHPLBJKB_04107 0.89 +0.2
4,321,186 + +0.7
4,321,186 + -0.3
4,321,186 + +0.5
4,321,186 + -0.7
4,321,186 + -0.9
4,321,188 + +1.2
4,321,188 + +0.3
4,321,189 - +1.2
4,321,189 - +1.6
4,321,189 - +0.4
4,321,198 + +0.3
4,321,199 - -0.6
4,321,294 + +1.1
4,321,294 + +0.2
4,321,294 + +0.7
4,321,295 - +1.0
4,321,295 - -0.3
4,321,410 + -0.4
4,321,411 - +0.7
4,321,473 + -0.1
4,321,473 + +0.4
4,321,787 + OHPLBJKB_04108 0.20 -0.3
4,321,788 - OHPLBJKB_04108 0.20 +2.0
4,321,788 - OHPLBJKB_04108 0.20 -0.4
4,321,945 + OHPLBJKB_04108 0.27 +0.5
4,321,946 - OHPLBJKB_04108 0.27 +1.1
4,321,968 + OHPLBJKB_04108 0.28 +0.6
4,322,103 + OHPLBJKB_04108 0.34 +0.9
4,322,139 + OHPLBJKB_04108 0.36 +2.0
4,322,204 + OHPLBJKB_04108 0.39 -0.1
4,322,204 + OHPLBJKB_04108 0.39 -0.3
4,322,204 + OHPLBJKB_04108 0.39 -0.4
4,322,204 + OHPLBJKB_04108 0.39 +0.0
4,322,204 + OHPLBJKB_04108 0.39 -1.0
4,322,205 - OHPLBJKB_04108 0.39 -0.8
4,322,205 - OHPLBJKB_04108 0.39 -1.4
4,322,205 - OHPLBJKB_04108 0.39 -0.2

Or see this region's nucleotide sequence