Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03044

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03042 and OHPLBJKB_03043 are separated by 380 nucleotidesOHPLBJKB_03043 and OHPLBJKB_03044 are separated by 8 nucleotidesOHPLBJKB_03044 and OHPLBJKB_03045 are separated by 23 nucleotidesOHPLBJKB_03045 and OHPLBJKB_03046 are separated by 34 nucleotidesOHPLBJKB_03046 and OHPLBJKB_03047 are separated by 15 nucleotidesOHPLBJKB_03047 and OHPLBJKB_03048 are separated by 47 nucleotidesOHPLBJKB_03048 and OHPLBJKB_03049 are separated by 37 nucleotidesOHPLBJKB_03049 and OHPLBJKB_03050 are separated by 153 nucleotides OHPLBJKB_03042: OHPLBJKB_03042 - Asparagine synthetase B [glutamine-hydrolyzing], at 3,174,451 to 3,176,115 _03042 OHPLBJKB_03043: OHPLBJKB_03043 - tRNA-Met, at 3,176,496 to 3,176,572 _03043 OHPLBJKB_03044: OHPLBJKB_03044 - tRNA-Leu, at 3,176,581 to 3,176,665 _03044 OHPLBJKB_03045: OHPLBJKB_03045 - tRNA-Gln, at 3,176,689 to 3,176,763 _03045 OHPLBJKB_03046: OHPLBJKB_03046 - tRNA-Gln, at 3,176,798 to 3,176,872 _03046 OHPLBJKB_03047: OHPLBJKB_03047 - tRNA-Met, at 3,176,888 to 3,176,964 _03047 OHPLBJKB_03048: OHPLBJKB_03048 - tRNA-Gln, at 3,177,012 to 3,177,086 _03048 OHPLBJKB_03049: OHPLBJKB_03049 - tRNA-Gln, at 3,177,124 to 3,177,198 _03049 OHPLBJKB_03050: OHPLBJKB_03050 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 3,177,352 to 3,178,527 _03050 Position (kb) 3176 3177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3175.596 kb on + strand, within OHPLBJKB_03042at 3175.596 kb on + strand, within OHPLBJKB_03042at 3175.596 kb on + strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.597 kb on - strand, within OHPLBJKB_03042at 3175.600 kb on + strand, within OHPLBJKB_03042at 3175.600 kb on + strand, within OHPLBJKB_03042at 3175.600 kb on + strand, within OHPLBJKB_03042at 3175.600 kb on + strand, within OHPLBJKB_03042at 3175.600 kb on + strand, within OHPLBJKB_03042at 3175.600 kb on + strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.601 kb on - strand, within OHPLBJKB_03042at 3175.768 kb on + strand, within OHPLBJKB_03042at 3175.769 kb on - strand, within OHPLBJKB_03042at 3175.769 kb on - strand, within OHPLBJKB_03042at 3175.769 kb on - strand, within OHPLBJKB_03042at 3175.769 kb on - strand, within OHPLBJKB_03042at 3175.825 kb on + strand, within OHPLBJKB_03042at 3175.910 kb on - strand, within OHPLBJKB_03042at 3175.936 kb on + strand, within OHPLBJKB_03042at 3175.937 kb on - strand, within OHPLBJKB_03042at 3176.107 kb on + strandat 3176.107 kb on + strandat 3176.107 kb on + strandat 3176.107 kb on + strandat 3176.107 kb on + strandat 3176.107 kb on + strandat 3176.107 kb on + strandat 3176.107 kb on + strandat 3176.107 kb on + strandat 3176.108 kb on - strandat 3176.108 kb on - strandat 3176.108 kb on - strandat 3176.109 kb on + strandat 3176.109 kb on + strandat 3176.109 kb on + strandat 3176.109 kb on + strandat 3176.109 kb on + strandat 3176.109 kb on + strandat 3176.109 kb on + strandat 3176.109 kb on + strandat 3176.109 kb on + strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.110 kb on - strandat 3176.114 kb on - strandat 3176.159 kb on - strandat 3176.239 kb on + strandat 3176.239 kb on + strandat 3176.239 kb on + strandat 3176.240 kb on - strandat 3176.248 kb on - strandat 3176.255 kb on - strandat 3176.255 kb on - strandat 3176.260 kb on - strandat 3176.274 kb on - strandat 3176.274 kb on - strandat 3176.319 kb on + strandat 3176.319 kb on + strandat 3176.319 kb on + strandat 3176.320 kb on - strandat 3176.343 kb on - strandat 3176.343 kb on - strandat 3176.363 kb on - strandat 3176.363 kb on - strandat 3177.110 kb on + strandat 3177.110 kb on + strandat 3177.110 kb on + strandat 3177.110 kb on + strandat 3177.110 kb on + strandat 3177.110 kb on + strandat 3177.203 kb on - strandat 3177.319 kb on + strandat 3177.347 kb on + strandat 3177.347 kb on + strandat 3177.347 kb on + strandat 3177.347 kb on + strandat 3177.347 kb on + strandat 3177.348 kb on - strandat 3177.348 kb on - strandat 3177.348 kb on - strandat 3177.354 kb on - strandat 3177.368 kb on + strandat 3177.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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3,175,596 + OHPLBJKB_03042 0.69 +0.1
3,175,596 + OHPLBJKB_03042 0.69 -0.3
3,175,596 + OHPLBJKB_03042 0.69 -1.3
3,175,597 - OHPLBJKB_03042 0.69 -1.0
3,175,597 - OHPLBJKB_03042 0.69 -0.3
3,175,597 - OHPLBJKB_03042 0.69 +0.5
3,175,597 - OHPLBJKB_03042 0.69 +0.3
3,175,597 - OHPLBJKB_03042 0.69 +0.4
3,175,597 - OHPLBJKB_03042 0.69 -0.1
3,175,597 - OHPLBJKB_03042 0.69 +0.4
3,175,597 - OHPLBJKB_03042 0.69 +0.1
3,175,597 - OHPLBJKB_03042 0.69 +1.0
3,175,600 + OHPLBJKB_03042 0.69 +0.9
3,175,600 + OHPLBJKB_03042 0.69 -1.3
3,175,600 + OHPLBJKB_03042 0.69 +0.6
3,175,600 + OHPLBJKB_03042 0.69 -0.8
3,175,600 + OHPLBJKB_03042 0.69 +0.0
3,175,600 + OHPLBJKB_03042 0.69 +0.7
3,175,601 - OHPLBJKB_03042 0.69 +0.1
3,175,601 - OHPLBJKB_03042 0.69 +0.7
3,175,601 - OHPLBJKB_03042 0.69 +0.6
3,175,601 - OHPLBJKB_03042 0.69 -0.0
3,175,601 - OHPLBJKB_03042 0.69 +0.5
3,175,601 - OHPLBJKB_03042 0.69 -1.0
3,175,601 - OHPLBJKB_03042 0.69 +0.0
3,175,601 - OHPLBJKB_03042 0.69 -0.1
3,175,601 - OHPLBJKB_03042 0.69 +0.5
3,175,768 + OHPLBJKB_03042 0.79 -1.4
3,175,769 - OHPLBJKB_03042 0.79 -1.6
3,175,769 - OHPLBJKB_03042 0.79 -1.2
3,175,769 - OHPLBJKB_03042 0.79 -0.5
3,175,769 - OHPLBJKB_03042 0.79 +0.3
3,175,825 + OHPLBJKB_03042 0.83 +0.6
3,175,910 - OHPLBJKB_03042 0.88 +0.0
3,175,936 + OHPLBJKB_03042 0.89 -0.7
3,175,937 - OHPLBJKB_03042 0.89 -1.5
3,176,107 + -0.3
3,176,107 + -0.9
3,176,107 + -0.5
3,176,107 + -0.1
3,176,107 + +0.5
3,176,107 + -0.2
3,176,107 + -1.1
3,176,107 + +0.0
3,176,107 + -1.0
3,176,108 - -1.7
3,176,108 - +0.2
3,176,108 - +1.0
3,176,109 + -1.1
3,176,109 + -0.6
3,176,109 + +0.1
3,176,109 + +0.9
3,176,109 + -0.9
3,176,109 + -1.2
3,176,109 + +0.5
3,176,109 + +0.4
3,176,109 + +0.7
3,176,110 - +0.0
3,176,110 - -0.1
3,176,110 - -0.3
3,176,110 - -0.2
3,176,110 - -0.4
3,176,110 - -1.3
3,176,110 - +0.0
3,176,110 - +1.0
3,176,110 - +1.6
3,176,110 - +0.7
3,176,114 - -0.7
3,176,159 - -0.8
3,176,239 + -0.8
3,176,239 + +1.0
3,176,239 + +0.0
3,176,240 - -1.2
3,176,248 - +0.3
3,176,255 - -1.3
3,176,255 - -0.5
3,176,260 - +0.4
3,176,274 - +0.6
3,176,274 - -1.8
3,176,319 + -1.4
3,176,319 + -1.1
3,176,319 + -0.8
3,176,320 - -1.3
3,176,343 - -0.5
3,176,343 - -1.0
3,176,363 - +0.7
3,176,363 - +0.6
3,177,110 + -1.3
3,177,110 + +0.1
3,177,110 + -1.1
3,177,110 + -1.5
3,177,110 + -3.3
3,177,110 + -1.8
3,177,203 - -0.1
3,177,319 + +0.9
3,177,347 + -0.7
3,177,347 + +1.8
3,177,347 + +1.2
3,177,347 + -2.3
3,177,347 + +0.0
3,177,348 - +1.6
3,177,348 - -0.9
3,177,348 - +0.6
3,177,354 - -1.6
3,177,368 + +0.6
3,177,369 - -2.0

Or see this region's nucleotide sequence