Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02711

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02709 and OHPLBJKB_02710 are separated by 75 nucleotidesOHPLBJKB_02710 and OHPLBJKB_02711 are separated by 185 nucleotidesOHPLBJKB_02711 and OHPLBJKB_02712 overlap by 40 nucleotidesOHPLBJKB_02712 and OHPLBJKB_02713 are separated by 69 nucleotides OHPLBJKB_02709: OHPLBJKB_02709 - Outer membrane protein A, at 2,820,972 to 2,822,012 _02709 OHPLBJKB_02710: OHPLBJKB_02710 - Macrodomain Ter protein, at 2,822,088 to 2,822,540 _02710 OHPLBJKB_02711: OHPLBJKB_02711 - Lon protease, at 2,822,726 to 2,824,486 _02711 OHPLBJKB_02712: OHPLBJKB_02712 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase, at 2,824,447 to 2,825,073 _02712 OHPLBJKB_02713: OHPLBJKB_02713 - Ribosome modulation factor, at 2,825,143 to 2,825,310 _02713 Position (kb) 2822 2823 2824 2825Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2821.776 kb on + strand, within OHPLBJKB_02709at 2822.010 kb on + strandat 2822.010 kb on + strandat 2822.010 kb on + strandat 2822.010 kb on + strandat 2822.062 kb on + strandat 2822.062 kb on + strandat 2822.089 kb on + strandat 2822.089 kb on + strandat 2822.090 kb on - strandat 2822.139 kb on - strand, within OHPLBJKB_02710at 2822.246 kb on + strand, within OHPLBJKB_02710at 2822.357 kb on + strand, within OHPLBJKB_02710at 2822.358 kb on - strand, within OHPLBJKB_02710at 2822.379 kb on + strand, within OHPLBJKB_02710at 2822.445 kb on + strand, within OHPLBJKB_02710at 2822.445 kb on + strand, within OHPLBJKB_02710at 2822.446 kb on - strand, within OHPLBJKB_02710at 2822.446 kb on - strand, within OHPLBJKB_02710at 2822.446 kb on - strand, within OHPLBJKB_02710at 2822.446 kb on - strand, within OHPLBJKB_02710at 2822.446 kb on - strand, within OHPLBJKB_02710at 2822.460 kb on + strand, within OHPLBJKB_02710at 2822.461 kb on - strand, within OHPLBJKB_02710at 2822.491 kb on + strand, within OHPLBJKB_02710at 2822.491 kb on + strand, within OHPLBJKB_02710at 2822.492 kb on - strand, within OHPLBJKB_02710at 2822.533 kb on + strandat 2822.644 kb on + strandat 2822.644 kb on + strandat 2822.788 kb on - strandat 2822.899 kb on + strandat 2822.900 kb on - strandat 2822.900 kb on - strandat 2822.965 kb on - strand, within OHPLBJKB_02711at 2823.028 kb on - strand, within OHPLBJKB_02711at 2823.028 kb on - strand, within OHPLBJKB_02711at 2823.131 kb on - strand, within OHPLBJKB_02711at 2823.142 kb on + strand, within OHPLBJKB_02711at 2823.143 kb on - strand, within OHPLBJKB_02711at 2823.202 kb on + strand, within OHPLBJKB_02711at 2823.202 kb on + strand, within OHPLBJKB_02711at 2823.245 kb on - strand, within OHPLBJKB_02711at 2823.410 kb on + strand, within OHPLBJKB_02711at 2823.411 kb on - strand, within OHPLBJKB_02711at 2823.457 kb on - strand, within OHPLBJKB_02711at 2823.485 kb on - strand, within OHPLBJKB_02711at 2823.496 kb on + strand, within OHPLBJKB_02711at 2823.496 kb on + strand, within OHPLBJKB_02711at 2823.497 kb on - strand, within OHPLBJKB_02711at 2823.497 kb on - strand, within OHPLBJKB_02711at 2823.504 kb on + strand, within OHPLBJKB_02711at 2823.557 kb on + strand, within OHPLBJKB_02711at 2823.614 kb on - strand, within OHPLBJKB_02711at 2823.664 kb on - strand, within OHPLBJKB_02711at 2823.670 kb on - strand, within OHPLBJKB_02711at 2823.670 kb on - strand, within OHPLBJKB_02711at 2823.716 kb on - strand, within OHPLBJKB_02711at 2823.716 kb on - strand, within OHPLBJKB_02711at 2823.844 kb on + strand, within OHPLBJKB_02711at 2823.963 kb on + strand, within OHPLBJKB_02711at 2824.016 kb on + strand, within OHPLBJKB_02711at 2824.016 kb on + strand, within OHPLBJKB_02711at 2824.036 kb on + strand, within OHPLBJKB_02711at 2824.037 kb on - strand, within OHPLBJKB_02711at 2824.108 kb on + strand, within OHPLBJKB_02711at 2824.158 kb on + strand, within OHPLBJKB_02711at 2824.158 kb on + strand, within OHPLBJKB_02711at 2824.158 kb on + strand, within OHPLBJKB_02711at 2824.159 kb on - strand, within OHPLBJKB_02711at 2824.254 kb on + strand, within OHPLBJKB_02711at 2824.254 kb on + strand, within OHPLBJKB_02711at 2824.254 kb on + strand, within OHPLBJKB_02711at 2824.255 kb on - strand, within OHPLBJKB_02711at 2824.342 kb on - strandat 2824.347 kb on + strandat 2824.348 kb on - strandat 2824.455 kb on + strandat 2824.456 kb on - strandat 2825.075 kb on + strandat 2825.153 kb on - strandat 2825.153 kb on - strandat 2825.153 kb on - strandat 2825.326 kb on + strandat 2825.380 kb on - strandat 2825.436 kb on - strandat 2825.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,821,776 + OHPLBJKB_02709 0.77 -1.5
2,822,010 + -1.1
2,822,010 + -1.9
2,822,010 + -0.6
2,822,010 + -2.8
2,822,062 + +0.3
2,822,062 + +0.4
2,822,089 + +1.3
2,822,089 + +0.8
2,822,090 - +0.5
2,822,139 - OHPLBJKB_02710 0.11 -0.8
2,822,246 + OHPLBJKB_02710 0.35 +1.6
2,822,357 + OHPLBJKB_02710 0.59 +1.3
2,822,358 - OHPLBJKB_02710 0.60 -0.4
2,822,379 + OHPLBJKB_02710 0.64 +2.9
2,822,445 + OHPLBJKB_02710 0.79 +2.6
2,822,445 + OHPLBJKB_02710 0.79 +2.0
2,822,446 - OHPLBJKB_02710 0.79 -1.2
2,822,446 - OHPLBJKB_02710 0.79 +1.3
2,822,446 - OHPLBJKB_02710 0.79 +1.2
2,822,446 - OHPLBJKB_02710 0.79 -0.0
2,822,446 - OHPLBJKB_02710 0.79 -1.9
2,822,460 + OHPLBJKB_02710 0.82 +0.5
2,822,461 - OHPLBJKB_02710 0.82 +0.9
2,822,491 + OHPLBJKB_02710 0.89 +0.7
2,822,491 + OHPLBJKB_02710 0.89 +0.3
2,822,492 - OHPLBJKB_02710 0.89 +0.1
2,822,533 + +0.9
2,822,644 + -1.7
2,822,644 + -0.9
2,822,788 - +0.8
2,822,899 + +0.5
2,822,900 - -1.5
2,822,900 - -0.3
2,822,965 - OHPLBJKB_02711 0.14 +0.6
2,823,028 - OHPLBJKB_02711 0.17 -0.1
2,823,028 - OHPLBJKB_02711 0.17 +0.4
2,823,131 - OHPLBJKB_02711 0.23 +1.0
2,823,142 + OHPLBJKB_02711 0.24 +1.3
2,823,143 - OHPLBJKB_02711 0.24 +1.0
2,823,202 + OHPLBJKB_02711 0.27 -0.4
2,823,202 + OHPLBJKB_02711 0.27 +0.9
2,823,245 - OHPLBJKB_02711 0.29 +2.1
2,823,410 + OHPLBJKB_02711 0.39 -2.5
2,823,411 - OHPLBJKB_02711 0.39 -1.4
2,823,457 - OHPLBJKB_02711 0.42 -0.3
2,823,485 - OHPLBJKB_02711 0.43 +1.5
2,823,496 + OHPLBJKB_02711 0.44 +0.3
2,823,496 + OHPLBJKB_02711 0.44 +0.5
2,823,497 - OHPLBJKB_02711 0.44 +0.5
2,823,497 - OHPLBJKB_02711 0.44 -0.1
2,823,504 + OHPLBJKB_02711 0.44 -0.4
2,823,557 + OHPLBJKB_02711 0.47 -0.3
2,823,614 - OHPLBJKB_02711 0.50 +1.1
2,823,664 - OHPLBJKB_02711 0.53 -1.2
2,823,670 - OHPLBJKB_02711 0.54 -0.4
2,823,670 - OHPLBJKB_02711 0.54 -0.4
2,823,716 - OHPLBJKB_02711 0.56 +3.0
2,823,716 - OHPLBJKB_02711 0.56 +0.5
2,823,844 + OHPLBJKB_02711 0.63 +0.2
2,823,963 + OHPLBJKB_02711 0.70 -1.0
2,824,016 + OHPLBJKB_02711 0.73 +0.4
2,824,016 + OHPLBJKB_02711 0.73 +0.3
2,824,036 + OHPLBJKB_02711 0.74 +0.1
2,824,037 - OHPLBJKB_02711 0.74 +0.3
2,824,108 + OHPLBJKB_02711 0.78 +1.1
2,824,158 + OHPLBJKB_02711 0.81 -0.2
2,824,158 + OHPLBJKB_02711 0.81 +0.5
2,824,158 + OHPLBJKB_02711 0.81 -0.1
2,824,159 - OHPLBJKB_02711 0.81 -0.6
2,824,254 + OHPLBJKB_02711 0.87 +0.2
2,824,254 + OHPLBJKB_02711 0.87 -1.3
2,824,254 + OHPLBJKB_02711 0.87 +1.3
2,824,255 - OHPLBJKB_02711 0.87 +2.0
2,824,342 - -1.0
2,824,347 + -0.3
2,824,348 - -0.9
2,824,455 + -1.9
2,824,456 - +1.5
2,825,075 + -1.0
2,825,153 - +0.5
2,825,153 - +0.4
2,825,153 - -1.6
2,825,326 + +0.1
2,825,380 - -1.0
2,825,436 - -1.0
2,825,466 - +0.5

Or see this region's nucleotide sequence