Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02109

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02108 and OHPLBJKB_02109 are separated by 390 nucleotidesOHPLBJKB_02109 and OHPLBJKB_02110 overlap by 4 nucleotides OHPLBJKB_02108: OHPLBJKB_02108 - hypothetical protein, at 2,183,651 to 2,184,229 _02108 OHPLBJKB_02109: OHPLBJKB_02109 - Beta-glucuronidase, at 2,184,620 to 2,186,431 _02109 OHPLBJKB_02110: OHPLBJKB_02110 - Glucuronide carrier protein, at 2,186,428 to 2,187,801 _02110 Position (kb) 2184 2185 2186 2187Strain fitness (log2 ratio) -2 -1 0 1 2at 2183.627 kb on + strandat 2183.627 kb on + strandat 2183.627 kb on + strandat 2183.627 kb on + strandat 2183.628 kb on - strandat 2183.628 kb on - strandat 2183.628 kb on - strandat 2183.628 kb on - strandat 2183.628 kb on - strandat 2183.784 kb on - strand, within OHPLBJKB_02108at 2183.784 kb on - strand, within OHPLBJKB_02108at 2183.825 kb on - strand, within OHPLBJKB_02108at 2183.825 kb on - strand, within OHPLBJKB_02108at 2183.894 kb on + strand, within OHPLBJKB_02108at 2183.894 kb on + strand, within OHPLBJKB_02108at 2183.894 kb on + strand, within OHPLBJKB_02108at 2183.894 kb on + strand, within OHPLBJKB_02108at 2183.894 kb on + strand, within OHPLBJKB_02108at 2183.894 kb on + strand, within OHPLBJKB_02108at 2183.895 kb on - strand, within OHPLBJKB_02108at 2183.895 kb on - strand, within OHPLBJKB_02108at 2183.895 kb on - strand, within OHPLBJKB_02108at 2183.895 kb on - strand, within OHPLBJKB_02108at 2183.896 kb on + strand, within OHPLBJKB_02108at 2183.897 kb on - strand, within OHPLBJKB_02108at 2183.897 kb on - strand, within OHPLBJKB_02108at 2183.897 kb on - strand, within OHPLBJKB_02108at 2184.011 kb on - strand, within OHPLBJKB_02108at 2184.017 kb on - strand, within OHPLBJKB_02108at 2184.017 kb on - strand, within OHPLBJKB_02108at 2184.017 kb on - strand, within OHPLBJKB_02108at 2184.216 kb on + strandat 2184.259 kb on - strandat 2184.259 kb on - strandat 2184.282 kb on + strandat 2184.283 kb on - strandat 2184.283 kb on - strandat 2184.351 kb on + strandat 2184.351 kb on + strandat 2184.351 kb on + strandat 2184.351 kb on + strandat 2184.351 kb on + strandat 2184.351 kb on + strandat 2184.352 kb on - strandat 2184.352 kb on - strandat 2184.352 kb on - strandat 2184.352 kb on - strandat 2184.439 kb on + strandat 2184.449 kb on + strandat 2184.449 kb on + strandat 2184.449 kb on + strandat 2184.449 kb on + strandat 2184.450 kb on - strandat 2184.451 kb on + strandat 2184.542 kb on - strandat 2184.542 kb on - strandat 2184.571 kb on - strandat 2184.599 kb on + strandat 2184.600 kb on - strandat 2184.600 kb on - strandat 2184.619 kb on + strandat 2184.619 kb on + strandat 2184.620 kb on - strandat 2184.624 kb on + strandat 2184.624 kb on + strandat 2184.624 kb on + strandat 2184.625 kb on - strandat 2184.625 kb on - strandat 2184.772 kb on + strandat 2184.803 kb on - strand, within OHPLBJKB_02109at 2184.803 kb on - strand, within OHPLBJKB_02109at 2184.806 kb on + strand, within OHPLBJKB_02109at 2184.807 kb on - strand, within OHPLBJKB_02109at 2184.981 kb on - strand, within OHPLBJKB_02109at 2185.002 kb on + strand, within OHPLBJKB_02109at 2185.003 kb on - strand, within OHPLBJKB_02109at 2185.006 kb on + strand, within OHPLBJKB_02109at 2185.007 kb on - strand, within OHPLBJKB_02109at 2185.007 kb on - strand, within OHPLBJKB_02109at 2185.007 kb on - strand, within OHPLBJKB_02109at 2185.007 kb on - strand, within OHPLBJKB_02109at 2185.097 kb on + strand, within OHPLBJKB_02109at 2185.098 kb on - strand, within OHPLBJKB_02109at 2185.098 kb on - strand, within OHPLBJKB_02109at 2185.115 kb on - strand, within OHPLBJKB_02109at 2185.118 kb on + strand, within OHPLBJKB_02109at 2185.119 kb on - strand, within OHPLBJKB_02109at 2185.119 kb on - strand, within OHPLBJKB_02109at 2185.140 kb on + strand, within OHPLBJKB_02109at 2185.140 kb on + strand, within OHPLBJKB_02109at 2185.140 kb on + strand, within OHPLBJKB_02109at 2185.141 kb on - strand, within OHPLBJKB_02109at 2185.403 kb on + strand, within OHPLBJKB_02109at 2185.403 kb on + strand, within OHPLBJKB_02109at 2185.403 kb on + strand, within OHPLBJKB_02109at 2185.403 kb on + strand, within OHPLBJKB_02109at 2185.403 kb on + strand, within OHPLBJKB_02109at 2185.403 kb on + strand, within OHPLBJKB_02109at 2185.403 kb on + strand, within OHPLBJKB_02109at 2185.408 kb on + strand, within OHPLBJKB_02109at 2185.408 kb on + strand, within OHPLBJKB_02109at 2185.409 kb on - strand, within OHPLBJKB_02109at 2185.600 kb on + strand, within OHPLBJKB_02109at 2185.601 kb on - strand, within OHPLBJKB_02109at 2185.616 kb on + strand, within OHPLBJKB_02109at 2185.743 kb on - strand, within OHPLBJKB_02109at 2185.786 kb on - strand, within OHPLBJKB_02109at 2185.890 kb on - strand, within OHPLBJKB_02109at 2185.956 kb on + strand, within OHPLBJKB_02109at 2185.956 kb on + strand, within OHPLBJKB_02109at 2185.957 kb on - strand, within OHPLBJKB_02109at 2185.957 kb on - strand, within OHPLBJKB_02109at 2186.033 kb on + strand, within OHPLBJKB_02109at 2186.034 kb on - strand, within OHPLBJKB_02109at 2186.034 kb on - strand, within OHPLBJKB_02109at 2186.133 kb on - strand, within OHPLBJKB_02109at 2186.143 kb on + strand, within OHPLBJKB_02109at 2186.143 kb on + strand, within OHPLBJKB_02109at 2186.168 kb on + strand, within OHPLBJKB_02109at 2186.168 kb on + strand, within OHPLBJKB_02109at 2186.192 kb on + strand, within OHPLBJKB_02109at 2186.193 kb on - strand, within OHPLBJKB_02109at 2186.212 kb on + strand, within OHPLBJKB_02109at 2186.216 kb on + strand, within OHPLBJKB_02109at 2186.216 kb on + strand, within OHPLBJKB_02109at 2186.217 kb on - strand, within OHPLBJKB_02109at 2186.217 kb on - strand, within OHPLBJKB_02109at 2186.217 kb on - strand, within OHPLBJKB_02109at 2186.217 kb on - strand, within OHPLBJKB_02109at 2186.298 kb on + strandat 2186.298 kb on + strandat 2186.298 kb on + strandat 2186.298 kb on + strandat 2186.299 kb on - strandat 2186.530 kb on + strandat 2186.530 kb on + strandat 2186.530 kb on + strandat 2186.531 kb on - strandat 2186.673 kb on - strand, within OHPLBJKB_02110at 2186.745 kb on + strand, within OHPLBJKB_02110at 2186.758 kb on + strand, within OHPLBJKB_02110at 2186.758 kb on + strand, within OHPLBJKB_02110at 2186.758 kb on + strand, within OHPLBJKB_02110at 2186.759 kb on - strand, within OHPLBJKB_02110at 2186.759 kb on - strand, within OHPLBJKB_02110at 2186.759 kb on - strand, within OHPLBJKB_02110at 2186.759 kb on - strand, within OHPLBJKB_02110at 2186.759 kb on - strand, within OHPLBJKB_02110at 2186.764 kb on + strand, within OHPLBJKB_02110at 2186.765 kb on - strand, within OHPLBJKB_02110at 2186.765 kb on - strand, within OHPLBJKB_02110at 2186.773 kb on + strand, within OHPLBJKB_02110at 2186.774 kb on - strand, within OHPLBJKB_02110at 2186.808 kb on + strand, within OHPLBJKB_02110at 2186.937 kb on + strand, within OHPLBJKB_02110at 2187.016 kb on + strand, within OHPLBJKB_02110at 2187.016 kb on + strand, within OHPLBJKB_02110at 2187.016 kb on + strand, within OHPLBJKB_02110at 2187.017 kb on - strand, within OHPLBJKB_02110at 2187.017 kb on - strand, within OHPLBJKB_02110at 2187.017 kb on - strand, within OHPLBJKB_02110at 2187.053 kb on + strand, within OHPLBJKB_02110at 2187.053 kb on + strand, within OHPLBJKB_02110at 2187.053 kb on + strand, within OHPLBJKB_02110at 2187.053 kb on + strand, within OHPLBJKB_02110at 2187.054 kb on - strand, within OHPLBJKB_02110at 2187.054 kb on - strand, within OHPLBJKB_02110at 2187.054 kb on - strand, within OHPLBJKB_02110at 2187.058 kb on - strand, within OHPLBJKB_02110at 2187.081 kb on + strand, within OHPLBJKB_02110at 2187.120 kb on + strand, within OHPLBJKB_02110at 2187.120 kb on + strand, within OHPLBJKB_02110at 2187.120 kb on + strand, within OHPLBJKB_02110at 2187.121 kb on - strand, within OHPLBJKB_02110at 2187.187 kb on + strand, within OHPLBJKB_02110at 2187.187 kb on + strand, within OHPLBJKB_02110at 2187.188 kb on - strand, within OHPLBJKB_02110at 2187.196 kb on + strand, within OHPLBJKB_02110at 2187.197 kb on - strand, within OHPLBJKB_02110at 2187.197 kb on - strand, within OHPLBJKB_02110at 2187.256 kb on - strand, within OHPLBJKB_02110at 2187.312 kb on + strand, within OHPLBJKB_02110at 2187.349 kb on + strand, within OHPLBJKB_02110

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,183,627 + -0.2
2,183,627 + +0.5
2,183,627 + -0.6
2,183,627 + -0.3
2,183,628 - -0.8
2,183,628 - +0.9
2,183,628 - +0.3
2,183,628 - +0.2
2,183,628 - -0.9
2,183,784 - OHPLBJKB_02108 0.23 +0.3
2,183,784 - OHPLBJKB_02108 0.23 -0.4
2,183,825 - OHPLBJKB_02108 0.30 +0.1
2,183,825 - OHPLBJKB_02108 0.30 -0.2
2,183,894 + OHPLBJKB_02108 0.42 -1.2
2,183,894 + OHPLBJKB_02108 0.42 -0.6
2,183,894 + OHPLBJKB_02108 0.42 -0.7
2,183,894 + OHPLBJKB_02108 0.42 +0.6
2,183,894 + OHPLBJKB_02108 0.42 -0.5
2,183,894 + OHPLBJKB_02108 0.42 -0.4
2,183,895 - OHPLBJKB_02108 0.42 -1.0
2,183,895 - OHPLBJKB_02108 0.42 +0.1
2,183,895 - OHPLBJKB_02108 0.42 -0.9
2,183,895 - OHPLBJKB_02108 0.42 +0.6
2,183,896 + OHPLBJKB_02108 0.42 -1.4
2,183,897 - OHPLBJKB_02108 0.42 -1.6
2,183,897 - OHPLBJKB_02108 0.42 +0.4
2,183,897 - OHPLBJKB_02108 0.42 -0.6
2,184,011 - OHPLBJKB_02108 0.62 +0.7
2,184,017 - OHPLBJKB_02108 0.63 -0.1
2,184,017 - OHPLBJKB_02108 0.63 -0.2
2,184,017 - OHPLBJKB_02108 0.63 +1.4
2,184,216 + -0.4
2,184,259 - +0.5
2,184,259 - -0.8
2,184,282 + +1.3
2,184,283 - +0.4
2,184,283 - +0.7
2,184,351 + +1.2
2,184,351 + +1.4
2,184,351 + +0.3
2,184,351 + -1.7
2,184,351 + -0.7
2,184,351 + -0.4
2,184,352 - -0.1
2,184,352 - +1.6
2,184,352 - -0.7
2,184,352 - -0.9
2,184,439 + -0.6
2,184,449 + -0.7
2,184,449 + +0.3
2,184,449 + -0.3
2,184,449 + -0.2
2,184,450 - -0.4
2,184,451 + -0.9
2,184,542 - -0.2
2,184,542 - -0.5
2,184,571 - -0.7
2,184,599 + -1.2
2,184,600 - +1.3
2,184,600 - +0.0
2,184,619 + -0.2
2,184,619 + +1.4
2,184,620 - -0.7
2,184,624 + -1.0
2,184,624 + +0.1
2,184,624 + -2.2
2,184,625 - +0.3
2,184,625 - -0.2
2,184,772 + +0.4
2,184,803 - OHPLBJKB_02109 0.10 +0.4
2,184,803 - OHPLBJKB_02109 0.10 +0.1
2,184,806 + OHPLBJKB_02109 0.10 -0.4
2,184,807 - OHPLBJKB_02109 0.10 -0.8
2,184,981 - OHPLBJKB_02109 0.20 +0.1
2,185,002 + OHPLBJKB_02109 0.21 +0.2
2,185,003 - OHPLBJKB_02109 0.21 -0.2
2,185,006 + OHPLBJKB_02109 0.21 -0.2
2,185,007 - OHPLBJKB_02109 0.21 -0.2
2,185,007 - OHPLBJKB_02109 0.21 +0.2
2,185,007 - OHPLBJKB_02109 0.21 -0.2
2,185,007 - OHPLBJKB_02109 0.21 +1.1
2,185,097 + OHPLBJKB_02109 0.26 +0.5
2,185,098 - OHPLBJKB_02109 0.26 -1.0
2,185,098 - OHPLBJKB_02109 0.26 -0.9
2,185,115 - OHPLBJKB_02109 0.27 -0.4
2,185,118 + OHPLBJKB_02109 0.27 +0.3
2,185,119 - OHPLBJKB_02109 0.28 -0.0
2,185,119 - OHPLBJKB_02109 0.28 +0.4
2,185,140 + OHPLBJKB_02109 0.29 -0.4
2,185,140 + OHPLBJKB_02109 0.29 -0.6
2,185,140 + OHPLBJKB_02109 0.29 +0.6
2,185,141 - OHPLBJKB_02109 0.29 -0.6
2,185,403 + OHPLBJKB_02109 0.43 -0.4
2,185,403 + OHPLBJKB_02109 0.43 +0.2
2,185,403 + OHPLBJKB_02109 0.43 -0.5
2,185,403 + OHPLBJKB_02109 0.43 +0.4
2,185,403 + OHPLBJKB_02109 0.43 +0.3
2,185,403 + OHPLBJKB_02109 0.43 +0.0
2,185,403 + OHPLBJKB_02109 0.43 +0.4
2,185,408 + OHPLBJKB_02109 0.43 +0.0
2,185,408 + OHPLBJKB_02109 0.43 +0.7
2,185,409 - OHPLBJKB_02109 0.44 +1.0
2,185,600 + OHPLBJKB_02109 0.54 -1.3
2,185,601 - OHPLBJKB_02109 0.54 -0.4
2,185,616 + OHPLBJKB_02109 0.55 +0.6
2,185,743 - OHPLBJKB_02109 0.62 -0.6
2,185,786 - OHPLBJKB_02109 0.64 +2.6
2,185,890 - OHPLBJKB_02109 0.70 +0.3
2,185,956 + OHPLBJKB_02109 0.74 -0.8
2,185,956 + OHPLBJKB_02109 0.74 -1.3
2,185,957 - OHPLBJKB_02109 0.74 +0.0
2,185,957 - OHPLBJKB_02109 0.74 +1.0
2,186,033 + OHPLBJKB_02109 0.78 -0.4
2,186,034 - OHPLBJKB_02109 0.78 +1.0
2,186,034 - OHPLBJKB_02109 0.78 -0.0
2,186,133 - OHPLBJKB_02109 0.83 -1.0
2,186,143 + OHPLBJKB_02109 0.84 -0.7
2,186,143 + OHPLBJKB_02109 0.84 -1.0
2,186,168 + OHPLBJKB_02109 0.85 -0.4
2,186,168 + OHPLBJKB_02109 0.85 +1.4
2,186,192 + OHPLBJKB_02109 0.87 -0.6
2,186,193 - OHPLBJKB_02109 0.87 +0.1
2,186,212 + OHPLBJKB_02109 0.88 -0.4
2,186,216 + OHPLBJKB_02109 0.88 -2.0
2,186,216 + OHPLBJKB_02109 0.88 -0.5
2,186,217 - OHPLBJKB_02109 0.88 -1.8
2,186,217 - OHPLBJKB_02109 0.88 +0.1
2,186,217 - OHPLBJKB_02109 0.88 +1.4
2,186,217 - OHPLBJKB_02109 0.88 +0.2
2,186,298 + +0.3
2,186,298 + +1.3
2,186,298 + +0.2
2,186,298 + -1.0
2,186,299 - +0.4
2,186,530 + -0.2
2,186,530 + +0.6
2,186,530 + -0.3
2,186,531 - +0.1
2,186,673 - OHPLBJKB_02110 0.18 +1.3
2,186,745 + OHPLBJKB_02110 0.23 -0.0
2,186,758 + OHPLBJKB_02110 0.24 -1.0
2,186,758 + OHPLBJKB_02110 0.24 -1.9
2,186,758 + OHPLBJKB_02110 0.24 +0.3
2,186,759 - OHPLBJKB_02110 0.24 -0.0
2,186,759 - OHPLBJKB_02110 0.24 +0.6
2,186,759 - OHPLBJKB_02110 0.24 +0.3
2,186,759 - OHPLBJKB_02110 0.24 -0.1
2,186,759 - OHPLBJKB_02110 0.24 -0.7
2,186,764 + OHPLBJKB_02110 0.24 +0.8
2,186,765 - OHPLBJKB_02110 0.25 +0.9
2,186,765 - OHPLBJKB_02110 0.25 -0.7
2,186,773 + OHPLBJKB_02110 0.25 -0.7
2,186,774 - OHPLBJKB_02110 0.25 -0.9
2,186,808 + OHPLBJKB_02110 0.28 -1.1
2,186,937 + OHPLBJKB_02110 0.37 -0.6
2,187,016 + OHPLBJKB_02110 0.43 +0.6
2,187,016 + OHPLBJKB_02110 0.43 +0.0
2,187,016 + OHPLBJKB_02110 0.43 -0.2
2,187,017 - OHPLBJKB_02110 0.43 -0.3
2,187,017 - OHPLBJKB_02110 0.43 -1.9
2,187,017 - OHPLBJKB_02110 0.43 +1.1
2,187,053 + OHPLBJKB_02110 0.45 -1.7
2,187,053 + OHPLBJKB_02110 0.45 +0.0
2,187,053 + OHPLBJKB_02110 0.45 -0.2
2,187,053 + OHPLBJKB_02110 0.45 +0.2
2,187,054 - OHPLBJKB_02110 0.46 +0.5
2,187,054 - OHPLBJKB_02110 0.46 +0.8
2,187,054 - OHPLBJKB_02110 0.46 -0.3
2,187,058 - OHPLBJKB_02110 0.46 -1.3
2,187,081 + OHPLBJKB_02110 0.48 -0.8
2,187,120 + OHPLBJKB_02110 0.50 +1.0
2,187,120 + OHPLBJKB_02110 0.50 +1.2
2,187,120 + OHPLBJKB_02110 0.50 +0.8
2,187,121 - OHPLBJKB_02110 0.50 -1.4
2,187,187 + OHPLBJKB_02110 0.55 -0.5
2,187,187 + OHPLBJKB_02110 0.55 -0.2
2,187,188 - OHPLBJKB_02110 0.55 +0.6
2,187,196 + OHPLBJKB_02110 0.56 -0.7
2,187,197 - OHPLBJKB_02110 0.56 -0.1
2,187,197 - OHPLBJKB_02110 0.56 +0.8
2,187,256 - OHPLBJKB_02110 0.60 +0.1
2,187,312 + OHPLBJKB_02110 0.64 +0.3
2,187,349 + OHPLBJKB_02110 0.67 -0.9

Or see this region's nucleotide sequence