Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00263

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00262 and OHPLBJKB_00263 are separated by 122 nucleotidesOHPLBJKB_00263 and OHPLBJKB_00264 are separated by 223 nucleotides OHPLBJKB_00262: OHPLBJKB_00262 - putative oxidoreductase YhhX, at 283,060 to 284,097 _00262 OHPLBJKB_00263: OHPLBJKB_00263 - Quercetin 2,3-dioxygenase, at 284,220 to 284,915 _00263 OHPLBJKB_00264: OHPLBJKB_00264 - HTH-type transcriptional regulator GntR, at 285,139 to 286,134 _00264 Position (kb) 284 285Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 283.238 kb on + strand, within OHPLBJKB_00262at 283.239 kb on - strand, within OHPLBJKB_00262at 283.241 kb on + strand, within OHPLBJKB_00262at 283.242 kb on - strand, within OHPLBJKB_00262at 283.522 kb on + strand, within OHPLBJKB_00262at 283.522 kb on + strand, within OHPLBJKB_00262at 283.576 kb on + strand, within OHPLBJKB_00262at 283.577 kb on - strand, within OHPLBJKB_00262at 283.577 kb on - strand, within OHPLBJKB_00262at 283.593 kb on + strand, within OHPLBJKB_00262at 283.593 kb on + strand, within OHPLBJKB_00262at 283.642 kb on + strand, within OHPLBJKB_00262at 283.642 kb on + strand, within OHPLBJKB_00262at 283.643 kb on - strand, within OHPLBJKB_00262at 283.683 kb on + strand, within OHPLBJKB_00262at 283.715 kb on + strand, within OHPLBJKB_00262at 283.715 kb on + strand, within OHPLBJKB_00262at 283.716 kb on - strand, within OHPLBJKB_00262at 283.797 kb on + strand, within OHPLBJKB_00262at 283.797 kb on + strand, within OHPLBJKB_00262at 283.797 kb on + strand, within OHPLBJKB_00262at 283.797 kb on + strand, within OHPLBJKB_00262at 283.797 kb on + strand, within OHPLBJKB_00262at 283.798 kb on - strand, within OHPLBJKB_00262at 283.798 kb on - strand, within OHPLBJKB_00262at 283.798 kb on - strand, within OHPLBJKB_00262at 283.802 kb on - strand, within OHPLBJKB_00262at 283.839 kb on + strand, within OHPLBJKB_00262at 283.840 kb on - strand, within OHPLBJKB_00262at 283.840 kb on - strand, within OHPLBJKB_00262at 283.840 kb on - strand, within OHPLBJKB_00262at 283.840 kb on - strand, within OHPLBJKB_00262at 283.842 kb on + strand, within OHPLBJKB_00262at 283.843 kb on - strand, within OHPLBJKB_00262at 283.894 kb on + strand, within OHPLBJKB_00262at 283.894 kb on + strand, within OHPLBJKB_00262at 283.894 kb on + strand, within OHPLBJKB_00262at 283.933 kb on - strand, within OHPLBJKB_00262at 283.963 kb on + strand, within OHPLBJKB_00262at 283.975 kb on + strand, within OHPLBJKB_00262at 283.975 kb on + strand, within OHPLBJKB_00262at 284.158 kb on - strandat 284.185 kb on + strandat 284.186 kb on - strandat 284.215 kb on + strandat 284.216 kb on - strandat 284.226 kb on + strandat 284.226 kb on + strandat 284.227 kb on - strandat 284.227 kb on - strandat 284.230 kb on + strandat 284.230 kb on + strandat 284.231 kb on - strandat 284.285 kb on + strandat 284.285 kb on + strandat 284.285 kb on + strandat 284.286 kb on - strandat 284.304 kb on + strand, within OHPLBJKB_00263at 284.304 kb on + strand, within OHPLBJKB_00263at 284.304 kb on + strand, within OHPLBJKB_00263at 284.304 kb on + strand, within OHPLBJKB_00263at 284.305 kb on - strand, within OHPLBJKB_00263at 284.305 kb on - strand, within OHPLBJKB_00263at 284.305 kb on - strand, within OHPLBJKB_00263at 284.307 kb on + strand, within OHPLBJKB_00263at 284.308 kb on - strand, within OHPLBJKB_00263at 284.396 kb on + strand, within OHPLBJKB_00263at 284.396 kb on + strand, within OHPLBJKB_00263at 284.397 kb on - strand, within OHPLBJKB_00263at 284.397 kb on - strand, within OHPLBJKB_00263at 284.397 kb on - strand, within OHPLBJKB_00263at 284.397 kb on - strand, within OHPLBJKB_00263at 284.402 kb on + strand, within OHPLBJKB_00263at 284.418 kb on + strand, within OHPLBJKB_00263at 284.418 kb on + strand, within OHPLBJKB_00263at 284.418 kb on + strand, within OHPLBJKB_00263at 284.418 kb on + strand, within OHPLBJKB_00263at 284.419 kb on - strand, within OHPLBJKB_00263at 284.419 kb on - strand, within OHPLBJKB_00263at 284.419 kb on - strand, within OHPLBJKB_00263at 284.433 kb on - strand, within OHPLBJKB_00263at 284.462 kb on + strand, within OHPLBJKB_00263at 284.495 kb on + strand, within OHPLBJKB_00263at 284.529 kb on + strand, within OHPLBJKB_00263at 284.529 kb on + strand, within OHPLBJKB_00263at 284.529 kb on + strand, within OHPLBJKB_00263at 284.529 kb on + strand, within OHPLBJKB_00263at 284.530 kb on - strand, within OHPLBJKB_00263at 284.597 kb on + strand, within OHPLBJKB_00263at 284.633 kb on - strand, within OHPLBJKB_00263at 284.890 kb on + strandat 284.984 kb on + strandat 284.984 kb on + strandat 284.984 kb on + strandat 284.985 kb on - strandat 284.985 kb on - strandat 285.035 kb on + strandat 285.036 kb on - strandat 285.036 kb on - strandat 285.036 kb on - strandat 285.036 kb on - strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.042 kb on + strandat 285.042 kb on + strandat 285.042 kb on + strandat 285.046 kb on + strandat 285.046 kb on + strandat 285.047 kb on - strandat 285.116 kb on - strandat 285.158 kb on + strandat 285.159 kb on - strandat 285.183 kb on - strandat 285.246 kb on - strand, within OHPLBJKB_00264at 285.283 kb on + strand, within OHPLBJKB_00264at 285.284 kb on - strand, within OHPLBJKB_00264at 285.286 kb on - strand, within OHPLBJKB_00264at 285.348 kb on - strand, within OHPLBJKB_00264at 285.381 kb on - strand, within OHPLBJKB_00264at 285.439 kb on + strand, within OHPLBJKB_00264at 285.445 kb on + strand, within OHPLBJKB_00264at 285.447 kb on + strand, within OHPLBJKB_00264at 285.522 kb on + strand, within OHPLBJKB_00264at 285.542 kb on + strand, within OHPLBJKB_00264at 285.542 kb on + strand, within OHPLBJKB_00264at 285.542 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.718 kb on - strand, within OHPLBJKB_00264at 285.718 kb on - strand, within OHPLBJKB_00264at 285.718 kb on - strand, within OHPLBJKB_00264at 285.718 kb on - strand, within OHPLBJKB_00264at 285.720 kb on + strand, within OHPLBJKB_00264at 285.720 kb on + strand, within OHPLBJKB_00264at 285.720 kb on + strand, within OHPLBJKB_00264at 285.721 kb on - strand, within OHPLBJKB_00264at 285.777 kb on + strand, within OHPLBJKB_00264at 285.777 kb on + strand, within OHPLBJKB_00264at 285.778 kb on - strand, within OHPLBJKB_00264at 285.778 kb on - strand, within OHPLBJKB_00264at 285.805 kb on + strand, within OHPLBJKB_00264at 285.806 kb on - strand, within OHPLBJKB_00264at 285.873 kb on + strand, within OHPLBJKB_00264

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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283,238 + OHPLBJKB_00262 0.17 -0.5
283,239 - OHPLBJKB_00262 0.17 +2.2
283,241 + OHPLBJKB_00262 0.17 -0.1
283,242 - OHPLBJKB_00262 0.18 -0.2
283,522 + OHPLBJKB_00262 0.45 +2.1
283,522 + OHPLBJKB_00262 0.45 -1.2
283,576 + OHPLBJKB_00262 0.50 -0.8
283,577 - OHPLBJKB_00262 0.50 -0.1
283,577 - OHPLBJKB_00262 0.50 +1.8
283,593 + OHPLBJKB_00262 0.51 +1.3
283,593 + OHPLBJKB_00262 0.51 -0.8
283,642 + OHPLBJKB_00262 0.56 +0.4
283,642 + OHPLBJKB_00262 0.56 -1.4
283,643 - OHPLBJKB_00262 0.56 +0.8
283,683 + OHPLBJKB_00262 0.60 -0.6
283,715 + OHPLBJKB_00262 0.63 -0.1
283,715 + OHPLBJKB_00262 0.63 -2.0
283,716 - OHPLBJKB_00262 0.63 +0.4
283,797 + OHPLBJKB_00262 0.71 +4.4
283,797 + OHPLBJKB_00262 0.71 +0.3
283,797 + OHPLBJKB_00262 0.71 -0.9
283,797 + OHPLBJKB_00262 0.71 -0.3
283,797 + OHPLBJKB_00262 0.71 +1.4
283,798 - OHPLBJKB_00262 0.71 +0.3
283,798 - OHPLBJKB_00262 0.71 +0.0
283,798 - OHPLBJKB_00262 0.71 +0.3
283,802 - OHPLBJKB_00262 0.71 +0.7
283,839 + OHPLBJKB_00262 0.75 -0.8
283,840 - OHPLBJKB_00262 0.75 -0.7
283,840 - OHPLBJKB_00262 0.75 +1.4
283,840 - OHPLBJKB_00262 0.75 -1.4
283,840 - OHPLBJKB_00262 0.75 +0.5
283,842 + OHPLBJKB_00262 0.75 -0.6
283,843 - OHPLBJKB_00262 0.75 -0.9
283,894 + OHPLBJKB_00262 0.80 -1.6
283,894 + OHPLBJKB_00262 0.80 -0.3
283,894 + OHPLBJKB_00262 0.80 +1.8
283,933 - OHPLBJKB_00262 0.84 -0.1
283,963 + OHPLBJKB_00262 0.87 -1.0
283,975 + OHPLBJKB_00262 0.88 +0.3
283,975 + OHPLBJKB_00262 0.88 -1.5
284,158 - -0.2
284,185 + -0.5
284,186 - -0.9
284,215 + +0.2
284,216 - +1.0
284,226 + -0.7
284,226 + +0.4
284,227 - -1.3
284,227 - +0.8
284,230 + -1.2
284,230 + +0.1
284,231 - +0.2
284,285 + -1.2
284,285 + -0.4
284,285 + -0.9
284,286 - +0.6
284,304 + OHPLBJKB_00263 0.12 -1.3
284,304 + OHPLBJKB_00263 0.12 +0.3
284,304 + OHPLBJKB_00263 0.12 +0.2
284,304 + OHPLBJKB_00263 0.12 +0.9
284,305 - OHPLBJKB_00263 0.12 +0.1
284,305 - OHPLBJKB_00263 0.12 +0.5
284,305 - OHPLBJKB_00263 0.12 +0.2
284,307 + OHPLBJKB_00263 0.12 +1.0
284,308 - OHPLBJKB_00263 0.13 -0.8
284,396 + OHPLBJKB_00263 0.25 -1.0
284,396 + OHPLBJKB_00263 0.25 -0.4
284,397 - OHPLBJKB_00263 0.25 -0.3
284,397 - OHPLBJKB_00263 0.25 -0.6
284,397 - OHPLBJKB_00263 0.25 +1.0
284,397 - OHPLBJKB_00263 0.25 +0.4
284,402 + OHPLBJKB_00263 0.26 +0.1
284,418 + OHPLBJKB_00263 0.28 -0.6
284,418 + OHPLBJKB_00263 0.28 +1.2
284,418 + OHPLBJKB_00263 0.28 -0.2
284,418 + OHPLBJKB_00263 0.28 -0.1
284,419 - OHPLBJKB_00263 0.29 +1.0
284,419 - OHPLBJKB_00263 0.29 -0.6
284,419 - OHPLBJKB_00263 0.29 +0.8
284,433 - OHPLBJKB_00263 0.31 -0.3
284,462 + OHPLBJKB_00263 0.35 +0.0
284,495 + OHPLBJKB_00263 0.40 -0.7
284,529 + OHPLBJKB_00263 0.44 +1.4
284,529 + OHPLBJKB_00263 0.44 +1.1
284,529 + OHPLBJKB_00263 0.44 -0.7
284,529 + OHPLBJKB_00263 0.44 -1.2
284,530 - OHPLBJKB_00263 0.45 -0.2
284,597 + OHPLBJKB_00263 0.54 +0.5
284,633 - OHPLBJKB_00263 0.59 +1.2
284,890 + +0.5
284,984 + +0.5
284,984 + +1.8
284,984 + -0.4
284,985 - -0.2
284,985 - +0.0
285,035 + +0.3
285,036 - -0.8
285,036 - +0.2
285,036 - +2.0
285,036 - -0.2
285,040 + +0.7
285,040 + -0.0
285,040 + +0.0
285,040 + +0.1
285,040 + -1.8
285,040 + -0.3
285,040 + +0.1
285,040 + +2.2
285,040 + -1.2
285,040 + -1.3
285,041 - +0.1
285,041 - -0.5
285,041 - -1.3
285,041 - +1.1
285,041 - -0.6
285,041 - -1.0
285,041 - -0.7
285,041 - -0.5
285,041 - -1.6
285,041 - +0.5
285,041 - -0.2
285,041 - +0.5
285,042 + +0.7
285,042 + +1.2
285,042 + +0.1
285,046 + -0.5
285,046 + -0.4
285,047 - -1.1
285,116 - +1.0
285,158 + +1.5
285,159 - -0.3
285,183 - -1.0
285,246 - OHPLBJKB_00264 0.11 -0.2
285,283 + OHPLBJKB_00264 0.14 -0.3
285,284 - OHPLBJKB_00264 0.15 +0.0
285,286 - OHPLBJKB_00264 0.15 -0.2
285,348 - OHPLBJKB_00264 0.21 +1.0
285,381 - OHPLBJKB_00264 0.24 -1.0
285,439 + OHPLBJKB_00264 0.30 -0.9
285,445 + OHPLBJKB_00264 0.31 +0.0
285,447 + OHPLBJKB_00264 0.31 +0.2
285,522 + OHPLBJKB_00264 0.38 +0.7
285,542 + OHPLBJKB_00264 0.40 +1.0
285,542 + OHPLBJKB_00264 0.40 +0.2
285,542 + OHPLBJKB_00264 0.40 +1.0
285,717 + OHPLBJKB_00264 0.58 +0.7
285,717 + OHPLBJKB_00264 0.58 +0.3
285,717 + OHPLBJKB_00264 0.58 -0.2
285,717 + OHPLBJKB_00264 0.58 -0.4
285,717 + OHPLBJKB_00264 0.58 +0.6
285,718 - OHPLBJKB_00264 0.58 +0.2
285,718 - OHPLBJKB_00264 0.58 -1.2
285,718 - OHPLBJKB_00264 0.58 +0.6
285,718 - OHPLBJKB_00264 0.58 -0.1
285,720 + OHPLBJKB_00264 0.58 -0.3
285,720 + OHPLBJKB_00264 0.58 -0.7
285,720 + OHPLBJKB_00264 0.58 -0.2
285,721 - OHPLBJKB_00264 0.58 -0.8
285,777 + OHPLBJKB_00264 0.64 -0.3
285,777 + OHPLBJKB_00264 0.64 -0.6
285,778 - OHPLBJKB_00264 0.64 +3.2
285,778 - OHPLBJKB_00264 0.64 +0.4
285,805 + OHPLBJKB_00264 0.67 +0.2
285,806 - OHPLBJKB_00264 0.67 +0.4
285,873 + OHPLBJKB_00264 0.74 -0.1

Or see this region's nucleotide sequence