Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28760

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteCs1768 and OKFHMN_28760 are separated by 31 nucleotidesOKFHMN_28760 and OKFHMN_28765 are separated by 186 nucleotidesOKFHMN_28765 and OKFHMN_28770 overlap by 4 nucleotides OKFHMN_28755: eCs1768 - DNA-binding protein, at 5,513,799 to 5,514,839 eCs1768 OKFHMN_28760: OKFHMN_28760 - replication protein, at 5,514,871 to 5,515,293 _28760 OKFHMN_28765: OKFHMN_28765 - DNA-binding protein, at 5,515,480 to 5,516,061 _28765 OKFHMN_28770: OKFHMN_28770 - hypothetical protein, at 5,516,058 to 5,516,222 _28770 Position (kb) 5514 5515 5516Strain fitness (log2 ratio) -1 0 1at 5513.971 kb on + strand, within eCs1768at 5514.045 kb on + strand, within eCs1768at 5514.373 kb on - strand, within eCs1768at 5515.170 kb on + strand, within OKFHMN_28760at 5515.731 kb on + strand, within OKFHMN_28765

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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5,513,971 + eCs1768 OKFHMN_28755 0.17 +1.7
5,514,045 + eCs1768 OKFHMN_28755 0.24 -0.0
5,514,373 - eCs1768 OKFHMN_28755 0.55 +1.1
5,515,170 + OKFHMN_28760 0.71 +1.1
5,515,731 + OKFHMN_28765 0.43 +0.9

Or see this region's nucleotide sequence