Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28705

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_28700 and dnaQ are separated by 290 nucleotidesdnaQ and OKFHMN_28710 are separated by 92 nucleotidesOKFHMN_28710 and dicB overlap by 4 nucleotides OKFHMN_28700: OKFHMN_28700 - integrase, at 5,506,166 to 5,507,296 _28700 OKFHMN_28705: dnaQ - exonuclease, at 5,507,587 to 5,510,058 dnaQ OKFHMN_28710: OKFHMN_28710 - DUF1482 domain-containing protein, at 5,510,151 to 5,510,342 _28710 OKFHMN_28715: dicB - Division inhibition protein DicB, at 5,510,339 to 5,510,527 dicB Position (kb) 5507 5508 5509 5510 5511Strain fitness (log2 ratio) -1 0 1at 5506.823 kb on + strand, within OKFHMN_28700at 5507.220 kb on + strandat 5507.557 kb on + strandat 5507.558 kb on - strandat 5508.025 kb on - strand, within dnaQat 5508.315 kb on - strand, within dnaQat 5509.557 kb on + strand, within dnaQat 5509.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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5,506,823 + OKFHMN_28700 0.58 +0.3
5,507,220 + +0.7
5,507,557 + -0.1
5,507,558 - +1.1
5,508,025 - dnaQ OKFHMN_28705 0.18 -0.3
5,508,315 - dnaQ OKFHMN_28705 0.29 +0.1
5,509,557 + dnaQ OKFHMN_28705 0.80 +0.3
5,509,824 - -0.9

Or see this region's nucleotide sequence