Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt narH and narJ overlap by 4 nucleotides narJ and narI overlap by 1 nucleotides narI and Tyr_trna are separated by 539 nucleotides Tyr_trna and Tyr_trna are separated by 209 nucleotides
OKFHMN_28545: narH - nitrate reductase subunit beta, at 5,477,444 to 5,478,982
narH
OKFHMN_28550: narJ - nitrate reductase molybdenum cofactor assembly chaperone, at 5,478,979 to 5,479,689
narJ
OKFHMN_28555: narI - respiratory nitrate reductase subunit gamma, at 5,479,689 to 5,480,366
narI
OKFHMN_28560: Tyr_trna - tRNA-Tyr(gta), at 5,480,906 to 5,480,990
_trna
OKFHMN_28565: Tyr_trna - tRNA-Tyr(gta), at 5,481,200 to 5,481,284
_trna
Position (kb) 5479
5480
5481 Strain fitness (log2 ratio) -2
-1
0
1 at 5478.798 kb on - strand, within narH at 5478.798 kb on - strand, within narH at 5478.998 kb on + strand at 5479.657 kb on + strand at 5479.723 kb on - strand at 5479.728 kb on + strand at 5479.758 kb on - strand, within narI at 5480.138 kb on + strand, within narI at 5480.336 kb on + strand at 5480.375 kb on + strand at 5481.014 kb on - strand at 5481.044 kb on - strand at 5481.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 5,478,798 - narH OKFHMN_28545 0.88 -0.6 5,478,798 - narH OKFHMN_28545 0.88 -0.5 5,478,998 + +0.4 5,479,657 + +1.0 5,479,723 - -0.8 5,479,728 + -0.9 5,479,758 - narI OKFHMN_28555 0.10 +0.7 5,480,138 + narI OKFHMN_28555 0.66 -1.9 5,480,336 + +1.4 5,480,375 + -0.3 5,481,014 - -0.3 5,481,044 - -0.2 5,481,120 - +0.6
Or see this region's nucleotide sequence