Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsxB and rsxA overlap by 1 nucleotides rsxA and ydgK are separated by 76 nucleotides ydgK and ydgT are separated by 85 nucleotides ydgT and blr are separated by 272 nucleotides blr and ydgJ are separated by 242 nucleotides
OKFHMN_27550: rsxB - electron transport complex subunit RsxB, at 5,303,863 to 5,304,441
rsxB
OKFHMN_27555: rsxA - electron transport complex subunit RsxA, at 5,304,441 to 5,305,022
rsxA
OKFHMN_27560: ydgK - Inner membrane protein YdgK, at 5,305,099 to 5,305,539
ydgK
OKFHMN_27565: ydgT - transcription modulator YdgT, at 5,305,625 to 5,305,840
ydgT
OKFHMN_27570: blr - division septum protein Blr, at 5,306,113 to 5,306,238
blr
OKFHMN_27575: ydgJ - Uncharacterized oxidoreductase YdgJ, at 5,306,481 to 5,307,521
ydgJ
Position (kb) 5305
5306 Strain fitness (log2 ratio) -1
0
1
2 at 5304.134 kb on - strand, within rsxB at 5304.175 kb on - strand, within rsxB at 5304.433 kb on - strand at 5304.486 kb on - strand at 5304.486 kb on - strand at 5304.725 kb on - strand, within rsxA at 5304.843 kb on - strand, within rsxA at 5304.863 kb on + strand, within rsxA at 5305.100 kb on + strand at 5305.101 kb on - strand at 5305.199 kb on - strand, within ydgK at 5305.516 kb on - strand at 5305.540 kb on - strand at 5305.582 kb on - strand at 5305.591 kb on - strand at 5305.635 kb on + strand at 5305.875 kb on - strand at 5306.114 kb on + strand at 5306.115 kb on - strand at 5306.115 kb on - strand at 5306.126 kb on - strand, within blr at 5306.126 kb on - strand, within blr at 5306.240 kb on - strand at 5306.379 kb on + strand at 5306.459 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 5,304,134 - rsxB OKFHMN_27550 0.47 -1.3 5,304,175 - rsxB OKFHMN_27550 0.54 +1.1 5,304,433 - -1.0 5,304,486 - +0.1 5,304,486 - -1.1 5,304,725 - rsxA OKFHMN_27555 0.49 +0.1 5,304,843 - rsxA OKFHMN_27555 0.69 -1.1 5,304,863 + rsxA OKFHMN_27555 0.73 -1.1 5,305,100 + +0.3 5,305,101 - -0.1 5,305,199 - ydgK OKFHMN_27560 0.23 -0.3 5,305,516 - +0.5 5,305,540 - -0.9 5,305,582 - +1.5 5,305,591 - -0.1 5,305,635 + +1.2 5,305,875 - -0.3 5,306,114 + +1.1 5,306,115 - -0.3 5,306,115 - +0.7 5,306,126 - blr OKFHMN_27570 0.10 +0.3 5,306,126 - blr OKFHMN_27570 0.10 +0.1 5,306,240 - -0.7 5,306,379 + +2.0 5,306,459 + +1.7
Or see this region's nucleotide sequence