Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26040

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttyrP and yecH are separated by 191 nucleotidesyecH and ftnA are separated by 36 nucleotidesftnA and yecR are separated by 170 nucleotides OKFHMN_26035: tyrP - tyrosine transporter TyrP, at 5,018,375 to 5,019,586 tyrP OKFHMN_26040: yecH - Uncharacterized protein YecH, at 5,019,778 to 5,020,017 yecH OKFHMN_26045: ftnA - non-heme ferritin, at 5,020,054 to 5,020,551 ftnA OKFHMN_26050: yecR - Uncharacterized protein YecR, at 5,020,722 to 5,021,045 yecR Position (kb) 5019 5020 5021Strain fitness (log2 ratio) -1 0 1at 5018.900 kb on - strand, within tyrPat 5018.924 kb on - strand, within tyrPat 5018.971 kb on - strand, within tyrPat 5018.971 kb on - strand, within tyrPat 5019.313 kb on - strand, within tyrPat 5019.318 kb on - strand, within tyrPat 5019.328 kb on + strand, within tyrPat 5019.329 kb on - strand, within tyrPat 5019.329 kb on - strand, within tyrPat 5019.367 kb on - strand, within tyrPat 5019.429 kb on - strand, within tyrPat 5019.442 kb on - strand, within tyrPat 5019.612 kb on - strandat 5019.669 kb on + strandat 5020.130 kb on - strand, within ftnAat 5020.314 kb on - strand, within ftnAat 5020.374 kb on - strand, within ftnAat 5020.393 kb on - strand, within ftnAat 5020.555 kb on - strandat 5020.555 kb on - strandat 5020.934 kb on - strand, within yecR

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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5,018,900 - tyrP OKFHMN_26035 0.43 +0.3
5,018,924 - tyrP OKFHMN_26035 0.45 -0.3
5,018,971 - tyrP OKFHMN_26035 0.49 -0.5
5,018,971 - tyrP OKFHMN_26035 0.49 -0.1
5,019,313 - tyrP OKFHMN_26035 0.77 +0.3
5,019,318 - tyrP OKFHMN_26035 0.78 +1.6
5,019,328 + tyrP OKFHMN_26035 0.79 +0.1
5,019,329 - tyrP OKFHMN_26035 0.79 +0.0
5,019,329 - tyrP OKFHMN_26035 0.79 +0.2
5,019,367 - tyrP OKFHMN_26035 0.82 +1.6
5,019,429 - tyrP OKFHMN_26035 0.87 -1.6
5,019,442 - tyrP OKFHMN_26035 0.88 -0.4
5,019,612 - +0.2
5,019,669 + -0.8
5,020,130 - ftnA OKFHMN_26045 0.15 -0.3
5,020,314 - ftnA OKFHMN_26045 0.52 -1.0
5,020,374 - ftnA OKFHMN_26045 0.64 -1.6
5,020,393 - ftnA OKFHMN_26045 0.68 -0.4
5,020,555 - +0.0
5,020,555 - -0.2
5,020,934 - yecR OKFHMN_26050 0.65 -0.4

Or see this region's nucleotide sequence