Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lexA and OKFHMN_24690 are separated by 117 nucleotides OKFHMN_24690 and OKFHMN_24695 are separated by 141 nucleotides OKFHMN_24695 and OKFHMN_24700 are separated by 32 nucleotides OKFHMN_24700 and OKFHMN_24705 overlap by 14 nucleotides OKFHMN_24705 and OKFHMN_24710 overlap by 4 nucleotides
OKFHMN_24685: lexA - phage repressor, at 4,810,850 to 4,811,503
lexA
OKFHMN_24690: OKFHMN_24690 - XRE family transcriptional regulator, at 4,811,621 to 4,811,836
_24690
OKFHMN_24695: OKFHMN_24695 - Bacteriophage CII protein, at 4,811,978 to 4,812,274
_24695
OKFHMN_24700: OKFHMN_24700 - Prophage protein, at 4,812,307 to 4,812,468
_24700
OKFHMN_24705: OKFHMN_24705 - replication of DNA, at 4,812,455 to 4,813,276
_24705
OKFHMN_24710: OKFHMN_24710 - replicative DNA helicase, at 4,813,273 to 4,814,649
_24710
Position (kb) 4812
4813
4814 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4811.607 kb on - strand at 4811.610 kb on - strand at 4811.639 kb on + strand at 4811.677 kb on + strand, within OKFHMN_24690 at 4811.677 kb on + strand, within OKFHMN_24690 at 4811.743 kb on + strand, within OKFHMN_24690 at 4811.857 kb on - strand at 4811.954 kb on - strand at 4812.109 kb on - strand, within OKFHMN_24695 at 4812.394 kb on - strand, within OKFHMN_24700 at 4812.472 kb on - strand at 4812.520 kb on + strand at 4812.520 kb on + strand at 4812.521 kb on - strand at 4812.557 kb on - strand, within OKFHMN_24705 at 4812.630 kb on - strand, within OKFHMN_24705 at 4812.817 kb on - strand, within OKFHMN_24705 at 4812.832 kb on + strand, within OKFHMN_24705 at 4812.861 kb on - strand, within OKFHMN_24705 at 4812.877 kb on - strand, within OKFHMN_24705 at 4812.893 kb on - strand, within OKFHMN_24705 at 4812.910 kb on + strand, within OKFHMN_24705 at 4812.955 kb on + strand, within OKFHMN_24705 at 4813.130 kb on + strand, within OKFHMN_24705 at 4813.130 kb on + strand, within OKFHMN_24705 at 4813.130 kb on + strand, within OKFHMN_24705 at 4813.293 kb on + strand at 4813.561 kb on + strand, within OKFHMN_24710 at 4813.562 kb on - strand, within OKFHMN_24710 at 4813.658 kb on + strand, within OKFHMN_24710 at 4813.732 kb on + strand, within OKFHMN_24710 at 4813.866 kb on + strand, within OKFHMN_24710 at 4813.921 kb on - strand, within OKFHMN_24710 at 4814.111 kb on + strand, within OKFHMN_24710 at 4814.111 kb on + strand, within OKFHMN_24710 at 4814.111 kb on + strand, within OKFHMN_24710
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 4,811,607 - +0.2 4,811,610 - -0.4 4,811,639 + -1.1 4,811,677 + OKFHMN_24690 0.26 -0.4 4,811,677 + OKFHMN_24690 0.26 -0.7 4,811,743 + OKFHMN_24690 0.56 -0.0 4,811,857 - -0.2 4,811,954 - -1.8 4,812,109 - OKFHMN_24695 0.44 +0.6 4,812,394 - OKFHMN_24700 0.54 +0.7 4,812,472 - +0.1 4,812,520 + -0.3 4,812,520 + -0.2 4,812,521 - -0.0 4,812,557 - OKFHMN_24705 0.12 -0.0 4,812,630 - OKFHMN_24705 0.21 +2.6 4,812,817 - OKFHMN_24705 0.44 +0.0 4,812,832 + OKFHMN_24705 0.46 -0.6 4,812,861 - OKFHMN_24705 0.49 +0.3 4,812,877 - OKFHMN_24705 0.51 +1.0 4,812,893 - OKFHMN_24705 0.53 -0.7 4,812,910 + OKFHMN_24705 0.55 -0.0 4,812,955 + OKFHMN_24705 0.61 -0.7 4,813,130 + OKFHMN_24705 0.82 -1.3 4,813,130 + OKFHMN_24705 0.82 +1.6 4,813,130 + OKFHMN_24705 0.82 -1.5 4,813,293 + +1.6 4,813,561 + OKFHMN_24710 0.21 -2.1 4,813,562 - OKFHMN_24710 0.21 +0.2 4,813,658 + OKFHMN_24710 0.28 -0.2 4,813,732 + OKFHMN_24710 0.33 -0.6 4,813,866 + OKFHMN_24710 0.43 -1.2 4,813,921 - OKFHMN_24710 0.47 +0.8 4,814,111 + OKFHMN_24710 0.61 +0.1 4,814,111 + OKFHMN_24710 0.61 +0.2 4,814,111 + OKFHMN_24710 0.61 +1.6
Or see this region's nucleotide sequence