Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rcnA and rcnR are separated by 120 nucleotides rcnR and OKFHMN_24055 are separated by 109 nucleotides OKFHMN_24055 and OKFHMN_24060 are separated by 9 nucleotides
OKFHMN_24045: rcnA - nickel/cobalt efflux protein RcnA, at 4,693,312 to 4,694,163
rcnA
OKFHMN_24050: rcnR - Ni(II)/Co(II)-binding transcriptional repressor RcnR, at 4,694,284 to 4,694,556
rcnR
OKFHMN_24055: OKFHMN_24055 - Outer membrane protein, at 4,694,666 to 4,694,980
_24055
OKFHMN_24060: OKFHMN_24060 - hypothetical protein, at 4,694,990 to 4,695,337
_24060
Position (kb) 4694
4695
4696 Strain fitness (log2 ratio) -1
0
1
2
3 at 4694.016 kb on + strand, within rcnA at 4694.098 kb on + strand at 4694.475 kb on + strand, within rcnR at 4694.564 kb on + strand at 4694.575 kb on + strand at 4694.624 kb on + strand at 4694.657 kb on - strand at 4694.792 kb on - strand, within OKFHMN_24055 at 4694.801 kb on - strand, within OKFHMN_24055 at 4694.801 kb on - strand, within OKFHMN_24055 at 4694.882 kb on - strand, within OKFHMN_24055 at 4694.897 kb on - strand, within OKFHMN_24055 at 4695.018 kb on + strand at 4695.019 kb on - strand at 4695.115 kb on + strand, within OKFHMN_24060 at 4695.117 kb on + strand, within OKFHMN_24060 at 4695.117 kb on - strand, within OKFHMN_24060 at 4695.145 kb on + strand, within OKFHMN_24060 at 4695.148 kb on - strand, within OKFHMN_24060 at 4695.275 kb on - strand, within OKFHMN_24060 at 4695.288 kb on + strand, within OKFHMN_24060 at 4695.292 kb on + strand, within OKFHMN_24060 at 4695.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 4,694,016 + rcnA OKFHMN_24045 0.83 +0.9 4,694,098 + -0.2 4,694,475 + rcnR OKFHMN_24050 0.70 +0.5 4,694,564 + +0.3 4,694,575 + +0.6 4,694,624 + +0.6 4,694,657 - -0.0 4,694,792 - OKFHMN_24055 0.40 +0.6 4,694,801 - OKFHMN_24055 0.43 -0.7 4,694,801 - OKFHMN_24055 0.43 +0.6 4,694,882 - OKFHMN_24055 0.69 -0.0 4,694,897 - OKFHMN_24055 0.73 +0.2 4,695,018 + +0.9 4,695,019 - +1.9 4,695,115 + OKFHMN_24060 0.36 -1.0 4,695,117 + OKFHMN_24060 0.36 +3.2 4,695,117 - OKFHMN_24060 0.36 +0.2 4,695,145 + OKFHMN_24060 0.45 +1.6 4,695,148 - OKFHMN_24060 0.45 +0.2 4,695,275 - OKFHMN_24060 0.82 -0.4 4,695,288 + OKFHMN_24060 0.86 -0.3 4,695,292 + OKFHMN_24060 0.87 -0.0 4,695,555 - -0.2
Or see this region's nucleotide sequence