Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23975

Experiment: EV146

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntzorP and zorO are separated by 519 nucleotideszorO and OKFHMN_23975 are separated by 109 nucleotidesOKFHMN_23975 and yehI are separated by 61 nucleotides OKFHMN_23960: zorP - Small toxic protein ZorP, at 4,671,946 to 4,672,035 zorP OKFHMN_23970: zorO - Small toxic protein ZorO, at 4,672,555 to 4,672,644 zorO OKFHMN_23975: OKFHMN_23975 - Protein, at 4,672,754 to 4,673,071 _23975 OKFHMN_23980: yehI - Uncharacterized protein YehI, at 4,673,133 to 4,676,762 yehI Position (kb) 4672 4673 4674Strain fitness (log2 ratio) -2 -1 0 1at 4671.760 kb on - strandat 4671.876 kb on - strandat 4671.903 kb on - strandat 4672.488 kb on + strandat 4672.543 kb on + strandat 4672.700 kb on - strandat 4672.702 kb on - strandat 4672.750 kb on + strandat 4672.863 kb on - strand, within OKFHMN_23975at 4673.034 kb on + strand, within OKFHMN_23975at 4673.087 kb on + strandat 4673.088 kb on - strandat 4673.100 kb on + strandat 4673.100 kb on + strandat 4673.221 kb on + strandat 4673.276 kb on + strandat 4673.545 kb on - strand, within yehIat 4673.685 kb on + strand, within yehIat 4673.765 kb on + strand, within yehIat 4674.024 kb on + strand, within yehIat 4674.024 kb on + strand, within yehI

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV146
remove
4,671,760 - +0.0
4,671,876 - -0.8
4,671,903 - -2.0
4,672,488 + -0.3
4,672,543 + -1.6
4,672,700 - -0.3
4,672,702 - +1.2
4,672,750 + -0.3
4,672,863 - OKFHMN_23975 0.34 +0.1
4,673,034 + OKFHMN_23975 0.88 +0.3
4,673,087 + +0.6
4,673,088 - +0.1
4,673,100 + -0.3
4,673,100 + -0.7
4,673,221 + -0.0
4,673,276 + -2.0
4,673,545 - yehI OKFHMN_23980 0.11 -2.0
4,673,685 + yehI OKFHMN_23980 0.15 +1.6
4,673,765 + yehI OKFHMN_23980 0.17 +1.0
4,674,024 + yehI OKFHMN_23980 0.25 -1.4
4,674,024 + yehI OKFHMN_23980 0.25 +0.0

Or see this region's nucleotide sequence