Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23115

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnrdB and nrdA are separated by 226 nucleotidesnrdA and yfaL are separated by 695 nucleotides OKFHMN_23105: nrdB - ribonucleotide-diphosphate reductase subunit beta, at 4,499,067 to 4,500,197 nrdB OKFHMN_23115: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 4,500,424 to 4,502,709 nrdA OKFHMN_23120: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 4,503,405 to 4,507,157 yfaL Position (kb) 4500 4501 4502 4503Strain fitness (log2 ratio) -1 0 1at 4503.000 kb on - strandat 4503.190 kb on - strandat 4503.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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4,503,000 - +0.3
4,503,190 - +0.6
4,503,620 + +1.6

Or see this region's nucleotide sequence