Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_20965 and OKFHMN_20970 overlap by 4 nucleotides OKFHMN_20970 and OKFHMN_20975 are separated by 0 nucleotides OKFHMN_20975 and OKFHMN_20980 are separated by 97 nucleotides
OKFHMN_20965: OKFHMN_20965 - integrase, at 4,077,465 to 4,078,778
_20965
OKFHMN_20970: OKFHMN_20970 - DNA-binding protein, at 4,078,775 to 4,080,406
_20970
OKFHMN_20975: OKFHMN_20975 - hypothetical protein, at 4,080,407 to 4,080,805
_20975
OKFHMN_20980: OKFHMN_20980 - hypothetical protein, at 4,080,903 to 4,081,316
_20980
Position (kb) 4078
4079
4080
4081 Strain fitness (log2 ratio) -1
0
1 at 4078.259 kb on + strand, within OKFHMN_20965 at 4078.559 kb on - strand, within OKFHMN_20965 at 4078.637 kb on + strand, within OKFHMN_20965 at 4078.914 kb on + strand at 4078.919 kb on - strand at 4079.151 kb on + strand, within OKFHMN_20970 at 4079.413 kb on - strand, within OKFHMN_20970 at 4079.413 kb on - strand, within OKFHMN_20970 at 4080.037 kb on + strand, within OKFHMN_20970 at 4080.184 kb on + strand, within OKFHMN_20970 at 4080.199 kb on - strand, within OKFHMN_20970 at 4080.549 kb on + strand, within OKFHMN_20975 at 4080.612 kb on + strand, within OKFHMN_20975 at 4080.779 kb on - strand at 4081.117 kb on - strand, within OKFHMN_20980
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 4,078,259 + OKFHMN_20965 0.60 -0.6 4,078,559 - OKFHMN_20965 0.83 -1.0 4,078,637 + OKFHMN_20965 0.89 +0.3 4,078,914 + +1.5 4,078,919 - -0.8 4,079,151 + OKFHMN_20970 0.23 +0.2 4,079,413 - OKFHMN_20970 0.39 +0.1 4,079,413 - OKFHMN_20970 0.39 +0.5 4,080,037 + OKFHMN_20970 0.77 +0.2 4,080,184 + OKFHMN_20970 0.86 +0.2 4,080,199 - OKFHMN_20970 0.87 -0.3 4,080,549 + OKFHMN_20975 0.36 +0.2 4,080,612 + OKFHMN_20975 0.51 -1.2 4,080,779 - -0.5 4,081,117 - OKFHMN_20980 0.52 +1.4
Or see this region's nucleotide sequence