Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20940

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygaQ and Ile2_trna are separated by 560 nucleotidesIle2_trna and OKFHMN_20945 are separated by 751 nucleotides OKFHMN_20935: ygaQ - Putative uncharacterized protein YgaQ, at 4,066,777 to 4,068,015 ygaQ OKFHMN_20940: Ile2_trna - tRNA-Ile2(cat), at 4,068,576 to 4,068,651 _trna OKFHMN_20945: OKFHMN_20945 - DUF5507 domain-containing protein, at 4,069,403 to 4,070,752 _20945 Position (kb) 4068 4069Strain fitness (log2 ratio) -1 0 1at 4068.331 kb on + strandat 4068.331 kb on + strandat 4068.385 kb on - strandat 4068.551 kb on - strandat 4068.552 kb on + strandat 4068.553 kb on - strandat 4068.569 kb on + strandat 4068.710 kb on - strandat 4068.890 kb on - strandat 4068.893 kb on + strandat 4068.913 kb on + strandat 4069.014 kb on - strandat 4069.017 kb on + strandat 4069.379 kb on + strandat 4069.460 kb on + strandat 4069.512 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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4,068,331 + -0.2
4,068,331 + -0.4
4,068,385 - -1.2
4,068,551 - +0.0
4,068,552 + -0.7
4,068,553 - +0.2
4,068,569 + +0.5
4,068,710 - +1.1
4,068,890 - +0.2
4,068,893 + +0.3
4,068,913 + +0.4
4,069,014 - -0.0
4,069,017 + -0.8
4,069,379 + +0.6
4,069,460 + -0.1
4,069,512 + +1.0

Or see this region's nucleotide sequence