Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19860

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygeK and OKFHMN_19855 are separated by 18 nucleotidesOKFHMN_19855 and ygeI are separated by 186 nucleotidesygeI and ygeH are separated by 166 nucleotides OKFHMN_19850: ygeK - Uncharacterized response regulatory protein YgeK, at 3,858,656 to 3,859,288 ygeK OKFHMN_19855: OKFHMN_19855 - Transglycosylase SLT domain-containing protein, at 3,859,307 to 3,859,708 _19855 OKFHMN_19860: ygeI - Uncharacterized protein YgeI, at 3,859,895 to 3,860,113 ygeI OKFHMN_19865: ygeH - HilA family transcriptional regulator YgeH, at 3,860,280 to 3,861,656 ygeH Position (kb) 3859 3860 3861Strain fitness (log2 ratio) -1 0 1at 3859.421 kb on - strand, within OKFHMN_19855at 3859.469 kb on - strand, within OKFHMN_19855at 3860.405 kb on - strandat 3860.405 kb on - strandat 3860.405 kb on - strandat 3860.528 kb on - strand, within ygeHat 3860.531 kb on - strand, within ygeH

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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3,859,421 - OKFHMN_19855 0.28 -0.4
3,859,469 - OKFHMN_19855 0.40 -0.5
3,860,405 - -1.4
3,860,405 - -0.4
3,860,405 - -0.2
3,860,528 - ygeH OKFHMN_19865 0.18 -0.6
3,860,531 - ygeH OKFHMN_19865 0.18 -0.1

Or see this region's nucleotide sequence