Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18605

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygjI and ebgC are separated by 62 nucleotidesebgC and ebgA overlap by 4 nucleotides OKFHMN_18600: ygjI - Inner membrane transporter YgjI, at 3,609,197 to 3,610,630 ygjI OKFHMN_18605: ebgC - beta-galactosidase subunit beta, at 3,610,693 to 3,611,142 ebgC OKFHMN_18610: ebgA - beta-galactosidase subunit alpha, at 3,611,139 to 3,614,231 ebgA Position (kb) 3610 3611 3612Strain fitness (log2 ratio) -1 0 1 2at 3609.824 kb on + strand, within ygjIat 3609.900 kb on + strand, within ygjIat 3609.900 kb on + strand, within ygjIat 3609.901 kb on - strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.902 kb on + strand, within ygjIat 3609.903 kb on - strand, within ygjIat 3609.974 kb on - strand, within ygjIat 3609.978 kb on + strand, within ygjIat 3609.978 kb on + strand, within ygjIat 3610.115 kb on - strand, within ygjIat 3610.132 kb on - strand, within ygjIat 3610.175 kb on - strand, within ygjIat 3610.175 kb on - strand, within ygjIat 3610.175 kb on - strand, within ygjIat 3610.270 kb on + strand, within ygjIat 3610.272 kb on + strand, within ygjIat 3610.272 kb on + strand, within ygjIat 3610.273 kb on - strand, within ygjIat 3610.294 kb on - strand, within ygjIat 3610.303 kb on - strand, within ygjIat 3610.303 kb on - strand, within ygjIat 3610.357 kb on - strand, within ygjIat 3610.360 kb on + strand, within ygjIat 3610.478 kb on - strand, within ygjIat 3610.630 kb on + strandat 3610.631 kb on - strandat 3610.710 kb on - strandat 3610.934 kb on + strand, within ebgCat 3611.004 kb on - strand, within ebgCat 3611.122 kb on + strandat 3611.123 kb on - strandat 3611.148 kb on - strandat 3611.148 kb on - strandat 3611.247 kb on - strandat 3611.247 kb on - strandat 3611.378 kb on + strandat 3611.413 kb on + strandat 3611.534 kb on - strand, within ebgAat 3611.571 kb on - strand, within ebgAat 3611.602 kb on + strand, within ebgAat 3611.629 kb on + strand, within ebgAat 3611.630 kb on - strand, within ebgAat 3611.761 kb on + strand, within ebgAat 3611.762 kb on - strand, within ebgAat 3611.762 kb on - strand, within ebgAat 3611.799 kb on + strand, within ebgAat 3611.800 kb on - strand, within ebgAat 3612.054 kb on - strand, within ebgA

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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3,609,824 + ygjI OKFHMN_18600 0.44 +0.4
3,609,900 + ygjI OKFHMN_18600 0.49 +1.0
3,609,900 + ygjI OKFHMN_18600 0.49 +1.3
3,609,901 - ygjI OKFHMN_18600 0.49 -0.1
3,609,902 + ygjI OKFHMN_18600 0.49 +0.4
3,609,902 + ygjI OKFHMN_18600 0.49 -0.4
3,609,902 + ygjI OKFHMN_18600 0.49 -0.6
3,609,902 + ygjI OKFHMN_18600 0.49 +0.0
3,609,902 + ygjI OKFHMN_18600 0.49 -0.4
3,609,902 + ygjI OKFHMN_18600 0.49 +0.0
3,609,902 + ygjI OKFHMN_18600 0.49 -0.3
3,609,902 + ygjI OKFHMN_18600 0.49 +2.0
3,609,902 + ygjI OKFHMN_18600 0.49 -0.2
3,609,903 - ygjI OKFHMN_18600 0.49 -0.8
3,609,974 - ygjI OKFHMN_18600 0.54 +0.4
3,609,978 + ygjI OKFHMN_18600 0.54 -0.3
3,609,978 + ygjI OKFHMN_18600 0.54 -0.1
3,610,115 - ygjI OKFHMN_18600 0.64 -1.1
3,610,132 - ygjI OKFHMN_18600 0.65 -0.3
3,610,175 - ygjI OKFHMN_18600 0.68 +2.0
3,610,175 - ygjI OKFHMN_18600 0.68 +0.4
3,610,175 - ygjI OKFHMN_18600 0.68 +0.6
3,610,270 + ygjI OKFHMN_18600 0.75 +0.4
3,610,272 + ygjI OKFHMN_18600 0.75 +1.2
3,610,272 + ygjI OKFHMN_18600 0.75 -1.1
3,610,273 - ygjI OKFHMN_18600 0.75 +0.2
3,610,294 - ygjI OKFHMN_18600 0.76 -0.7
3,610,303 - ygjI OKFHMN_18600 0.77 -0.9
3,610,303 - ygjI OKFHMN_18600 0.77 +0.6
3,610,357 - ygjI OKFHMN_18600 0.81 +0.6
3,610,360 + ygjI OKFHMN_18600 0.81 +1.4
3,610,478 - ygjI OKFHMN_18600 0.89 -1.1
3,610,630 + -0.3
3,610,631 - -0.1
3,610,710 - +0.6
3,610,934 + ebgC OKFHMN_18605 0.54 +0.5
3,611,004 - ebgC OKFHMN_18605 0.69 -0.1
3,611,122 + +2.6
3,611,123 - +0.7
3,611,148 - +0.2
3,611,148 - -0.4
3,611,247 - +0.6
3,611,247 - +0.2
3,611,378 + -0.4
3,611,413 + +0.0
3,611,534 - ebgA OKFHMN_18610 0.13 +0.1
3,611,571 - ebgA OKFHMN_18610 0.14 +0.0
3,611,602 + ebgA OKFHMN_18610 0.15 +0.0
3,611,629 + ebgA OKFHMN_18610 0.16 -0.4
3,611,630 - ebgA OKFHMN_18610 0.16 +0.3
3,611,761 + ebgA OKFHMN_18610 0.20 -1.0
3,611,762 - ebgA OKFHMN_18610 0.20 -0.8
3,611,762 - ebgA OKFHMN_18610 0.20 -0.5
3,611,799 + ebgA OKFHMN_18610 0.21 -1.3
3,611,800 - ebgA OKFHMN_18610 0.21 -0.1
3,612,054 - ebgA OKFHMN_18610 0.30 +0.4

Or see this region's nucleotide sequence