Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18275

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyraH and OKFHMN_18275 are separated by 400 nucleotidesOKFHMN_18275 and OKFHMN_18280 are separated by 30 nucleotidesOKFHMN_18280 and agaD are separated by 54 nucleotides OKFHMN_18270: yraH - Uncharacterized fimbrial-like protein YraH, at 3,546,845 to 3,547,429 yraH OKFHMN_18275: OKFHMN_18275 - galactosamine-6-phosphate isomerase, at 3,547,830 to 3,548,339 _18275 OKFHMN_18280: OKFHMN_18280 - Putative galactosamine-6-phosphate isomerase, at 3,548,370 to 3,548,531 _18280 OKFHMN_18285: agaD - PTS galactosamine transporter subunit IID, at 3,548,586 to 3,549,377 agaD Position (kb) 3547 3548 3549Strain fitness (log2 ratio) -1 0 1 2at 3546.844 kb on - strandat 3546.920 kb on + strand, within yraHat 3546.920 kb on + strand, within yraHat 3546.920 kb on + strand, within yraHat 3546.921 kb on - strand, within yraHat 3546.921 kb on - strand, within yraHat 3546.924 kb on + strand, within yraHat 3546.925 kb on - strand, within yraHat 3546.927 kb on + strand, within yraHat 3546.927 kb on + strand, within yraHat 3546.989 kb on - strand, within yraHat 3547.001 kb on - strand, within yraHat 3547.015 kb on + strand, within yraHat 3547.016 kb on - strand, within yraHat 3547.016 kb on - strand, within yraHat 3547.049 kb on - strand, within yraHat 3547.142 kb on + strand, within yraHat 3547.205 kb on + strand, within yraHat 3547.270 kb on - strand, within yraHat 3547.350 kb on - strand, within yraHat 3547.432 kb on - strandat 3547.792 kb on - strandat 3548.248 kb on - strand, within OKFHMN_18275at 3548.392 kb on + strand, within OKFHMN_18280at 3548.392 kb on + strand, within OKFHMN_18280at 3548.398 kb on + strand, within OKFHMN_18280at 3548.398 kb on + strand, within OKFHMN_18280at 3548.398 kb on + strand, within OKFHMN_18280at 3548.398 kb on + strand, within OKFHMN_18280at 3548.399 kb on - strand, within OKFHMN_18280at 3548.470 kb on - strand, within OKFHMN_18280at 3548.494 kb on - strand, within OKFHMN_18280at 3548.502 kb on - strand, within OKFHMN_18280at 3548.503 kb on + strand, within OKFHMN_18280at 3548.504 kb on - strand, within OKFHMN_18280at 3548.504 kb on - strand, within OKFHMN_18280at 3548.677 kb on + strand, within agaDat 3548.681 kb on - strand, within agaDat 3548.696 kb on - strand, within agaDat 3548.696 kb on - strand, within agaDat 3548.792 kb on + strand, within agaDat 3548.792 kb on + strand, within agaDat 3548.793 kb on - strand, within agaDat 3548.795 kb on + strand, within agaDat 3548.796 kb on - strand, within agaDat 3548.803 kb on + strand, within agaDat 3548.803 kb on + strand, within agaDat 3548.948 kb on + strand, within agaDat 3548.971 kb on - strand, within agaDat 3549.027 kb on - strand, within agaDat 3549.105 kb on - strand, within agaDat 3549.144 kb on + strand, within agaDat 3549.185 kb on + strand, within agaDat 3549.186 kb on - strand, within agaDat 3549.220 kb on - strand, within agaDat 3549.239 kb on + strand, within agaDat 3549.241 kb on + strand, within agaDat 3549.241 kb on + strand, within agaDat 3549.276 kb on - strand, within agaDat 3549.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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3,546,844 - +1.5
3,546,920 + yraH OKFHMN_18270 0.13 +1.2
3,546,920 + yraH OKFHMN_18270 0.13 +0.5
3,546,920 + yraH OKFHMN_18270 0.13 +0.3
3,546,921 - yraH OKFHMN_18270 0.13 -0.2
3,546,921 - yraH OKFHMN_18270 0.13 +0.0
3,546,924 + yraH OKFHMN_18270 0.14 -0.5
3,546,925 - yraH OKFHMN_18270 0.14 -0.1
3,546,927 + yraH OKFHMN_18270 0.14 +0.4
3,546,927 + yraH OKFHMN_18270 0.14 +0.4
3,546,989 - yraH OKFHMN_18270 0.25 -0.2
3,547,001 - yraH OKFHMN_18270 0.27 -0.3
3,547,015 + yraH OKFHMN_18270 0.29 -0.3
3,547,016 - yraH OKFHMN_18270 0.29 +0.3
3,547,016 - yraH OKFHMN_18270 0.29 +1.4
3,547,049 - yraH OKFHMN_18270 0.35 +1.0
3,547,142 + yraH OKFHMN_18270 0.51 +0.2
3,547,205 + yraH OKFHMN_18270 0.62 +0.1
3,547,270 - yraH OKFHMN_18270 0.73 +0.0
3,547,350 - yraH OKFHMN_18270 0.86 -0.8
3,547,432 - -0.4
3,547,792 - -0.5
3,548,248 - OKFHMN_18275 0.82 -0.2
3,548,392 + OKFHMN_18280 0.14 +1.3
3,548,392 + OKFHMN_18280 0.14 +0.0
3,548,398 + OKFHMN_18280 0.17 -0.4
3,548,398 + OKFHMN_18280 0.17 +0.8
3,548,398 + OKFHMN_18280 0.17 +0.2
3,548,398 + OKFHMN_18280 0.17 +1.0
3,548,399 - OKFHMN_18280 0.18 +0.6
3,548,470 - OKFHMN_18280 0.62 -1.3
3,548,494 - OKFHMN_18280 0.77 -0.1
3,548,502 - OKFHMN_18280 0.81 +0.0
3,548,503 + OKFHMN_18280 0.82 +0.1
3,548,504 - OKFHMN_18280 0.83 +0.9
3,548,504 - OKFHMN_18280 0.83 -0.6
3,548,677 + agaD OKFHMN_18285 0.11 -0.7
3,548,681 - agaD OKFHMN_18285 0.12 -0.2
3,548,696 - agaD OKFHMN_18285 0.14 +0.1
3,548,696 - agaD OKFHMN_18285 0.14 +0.3
3,548,792 + agaD OKFHMN_18285 0.26 +0.2
3,548,792 + agaD OKFHMN_18285 0.26 +0.1
3,548,793 - agaD OKFHMN_18285 0.26 +2.0
3,548,795 + agaD OKFHMN_18285 0.26 -0.4
3,548,796 - agaD OKFHMN_18285 0.27 +0.2
3,548,803 + agaD OKFHMN_18285 0.27 +0.5
3,548,803 + agaD OKFHMN_18285 0.27 -0.4
3,548,948 + agaD OKFHMN_18285 0.46 -0.4
3,548,971 - agaD OKFHMN_18285 0.49 -0.6
3,549,027 - agaD OKFHMN_18285 0.56 +1.0
3,549,105 - agaD OKFHMN_18285 0.66 +0.2
3,549,144 + agaD OKFHMN_18285 0.70 -0.5
3,549,185 + agaD OKFHMN_18285 0.76 -1.1
3,549,186 - agaD OKFHMN_18285 0.76 +0.4
3,549,220 - agaD OKFHMN_18285 0.80 +1.0
3,549,239 + agaD OKFHMN_18285 0.82 +0.3
3,549,241 + agaD OKFHMN_18285 0.83 +0.4
3,549,241 + agaD OKFHMN_18285 0.83 +0.1
3,549,276 - agaD OKFHMN_18285 0.87 +0.0
3,549,306 - -0.6

Or see this region's nucleotide sequence