Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14990

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_14985 and yidC are separated by 105 nucleotidesyidC and rnpA are separated by 223 nucleotidesrnpA and rpmH are separated by 49 nucleotidesrpmH and ysdD are separated by 229 nucleotides OKFHMN_14985: OKFHMN_14985 - tRNA modification GTPase MnmE, at 2,900,654 to 2,902,018 _14985 OKFHMN_14990: yidC - membrane protein insertase YidC, at 2,902,124 to 2,903,770 yidC OKFHMN_14995: rnpA - ribonuclease P protein component, at 2,903,994 to 2,904,320 rnpA OKFHMN_15000: rpmH - 50S ribosomal protein L34, at 2,904,370 to 2,904,510 rpmH OKFHMN_15005: ysdD - Protein YsdD, at 2,904,740 to 2,904,820 ysdD Position (kb) 2902 2903 2904Strain fitness (log2 ratio) -1 0 1 2 3at 2901.388 kb on + strand, within OKFHMN_14985at 2902.000 kb on + strandat 2902.107 kb on - strandat 2903.962 kb on - strandat 2904.653 kb on + strandat 2904.693 kb on + strandat 2904.741 kb on + strandat 2904.741 kb on + strandat 2904.742 kb on - strandat 2904.743 kb on + strandat 2904.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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2,901,388 + OKFHMN_14985 0.54 +1.1
2,902,000 + +3.1
2,902,107 - +0.3
2,903,962 - -0.7
2,904,653 + -0.3
2,904,693 + +0.2
2,904,741 + -0.6
2,904,741 + +1.2
2,904,742 - +0.1
2,904,743 + -0.3
2,904,744 - +0.3

Or see this region's nucleotide sequence