Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14225

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt16S_rrna and hemG are separated by 380 nucleotideshemG and trkH are separated by 11 nucleotides OKFHMN_14220: 16S_rrna - 16S ribosomal RNA, at 2,741,847 to 2,743,388 _rrna OKFHMN_14225: hemG - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 2,743,769 to 2,744,314 hemG OKFHMN_14230: trkH - Trk system potassium transporter TrkH, at 2,744,326 to 2,745,777 trkH Position (kb) 2743 2744 2745Strain fitness (log2 ratio) -1 0 1 2at 2743.771 kb on - strandat 2744.316 kb on + strandat 2744.316 kb on + strandat 2744.317 kb on - strandat 2744.317 kb on - strandat 2744.317 kb on - strandat 2744.319 kb on + strandat 2744.319 kb on + strandat 2744.319 kb on + strandat 2744.320 kb on - strandat 2744.320 kb on - strandat 2744.320 kb on - strandat 2745.057 kb on + strand, within trkH

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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2,743,771 - +0.4
2,744,316 + +0.1
2,744,316 + -1.4
2,744,317 - -0.7
2,744,317 - -1.0
2,744,317 - +2.1
2,744,319 + -1.1
2,744,319 + -0.1
2,744,319 + +1.4
2,744,320 - -0.2
2,744,320 - -0.1
2,744,320 - -0.1
2,745,057 + trkH OKFHMN_14230 0.50 +0.1

Or see this region's nucleotide sequence