Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09635

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09630 and OKFHMN_09635 are separated by 277 nucleotidesOKFHMN_09635 and OKFHMN_09640 overlap by 83 nucleotidesOKFHMN_09640 and yfdR are separated by 513 nucleotides OKFHMN_09630: OKFHMN_09630 - transcriptional regulator, at 1,796,037 to 1,796,729 _09630 OKFHMN_09635: OKFHMN_09635 - hypothetical protein, at 1,797,007 to 1,797,303 _09635 OKFHMN_09640: OKFHMN_09640 - hypothetical protein, at 1,797,221 to 1,797,466 _09640 OKFHMN_09645: yfdR - 5'-deoxynucleotidase, at 1,797,980 to 1,798,516 yfdR Position (kb) 1797 1798Strain fitness (log2 ratio) -3 -2 -1 0 1at 1796.723 kb on + strandat 1796.723 kb on + strandat 1796.723 kb on + strandat 1796.723 kb on + strandat 1796.728 kb on - strandat 1796.858 kb on + strandat 1796.859 kb on - strandat 1796.895 kb on + strandat 1796.906 kb on + strandat 1796.906 kb on + strandat 1796.907 kb on - strandat 1797.023 kb on - strandat 1797.052 kb on - strand, within OKFHMN_09635at 1797.222 kb on + strandat 1797.314 kb on + strand, within OKFHMN_09640at 1797.315 kb on - strand, within OKFHMN_09640at 1797.480 kb on + strandat 1797.481 kb on - strandat 1797.481 kb on - strandat 1797.485 kb on - strandat 1797.545 kb on + strandat 1797.545 kb on + strandat 1797.546 kb on - strandat 1797.713 kb on + strandat 1797.713 kb on + strandat 1797.736 kb on - strandat 1797.754 kb on + strandat 1797.966 kb on - strandat 1797.966 kb on - strandat 1798.033 kb on + strandat 1798.202 kb on + strand, within yfdRat 1798.250 kb on - strand, within yfdRat 1798.281 kb on + strand, within yfdRat 1798.282 kb on - strand, within yfdRat 1798.299 kb on + strand, within yfdRat 1798.300 kb on - strand, within yfdR

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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1,796,723 + -2.0
1,796,723 + -3.5
1,796,723 + -0.9
1,796,723 + +0.3
1,796,728 - +0.1
1,796,858 + -0.6
1,796,859 - -0.9
1,796,895 + -0.6
1,796,906 + +0.0
1,796,906 + +0.5
1,796,907 - -1.6
1,797,023 - +0.6
1,797,052 - OKFHMN_09635 0.15 -0.6
1,797,222 + -1.0
1,797,314 + OKFHMN_09640 0.38 +0.5
1,797,315 - OKFHMN_09640 0.38 +0.0
1,797,480 + -0.3
1,797,481 - +0.2
1,797,481 - -0.3
1,797,485 - +0.3
1,797,545 + +0.5
1,797,545 + +1.0
1,797,546 - +1.2
1,797,713 + +0.0
1,797,713 + +0.0
1,797,736 - -1.1
1,797,754 + +0.5
1,797,966 - -0.0
1,797,966 - -0.0
1,798,033 + -2.2
1,798,202 + yfdR OKFHMN_09645 0.41 -1.1
1,798,250 - yfdR OKFHMN_09645 0.50 +0.8
1,798,281 + yfdR OKFHMN_09645 0.56 -1.1
1,798,282 - yfdR OKFHMN_09645 0.56 +1.3
1,798,299 + yfdR OKFHMN_09645 0.59 +0.4
1,798,300 - yfdR OKFHMN_09645 0.60 +0.9

Or see this region's nucleotide sequence