Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09625

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09610 and ymfM are separated by 9 nucleotidesymfM and ymfL overlap by 4 nucleotidesymfL and OKFHMN_09625 overlap by 8 nucleotidesOKFHMN_09625 and OKFHMN_09630 are separated by 97 nucleotides OKFHMN_09610: OKFHMN_09610 - helix-turn-helix domain-containing protein, at 1,793,849 to 1,794,790 _09610 OKFHMN_09615: ymfM - Uncharacterized protein YmfM, at 1,794,800 to 1,795,138 ymfM OKFHMN_09620: ymfL - Uncharacterized protein YmfL, at 1,795,135 to 1,795,686 ymfL OKFHMN_09625: OKFHMN_09625 - XRE family transcriptional regulator, at 1,795,679 to 1,795,939 _09625 OKFHMN_09630: OKFHMN_09630 - transcriptional regulator, at 1,796,037 to 1,796,729 _09630 Position (kb) 1795 1796Strain fitness (log2 ratio) -3 -2 -1 0 1at 1794.691 kb on + strand, within OKFHMN_09610at 1794.715 kb on + strandat 1794.768 kb on + strandat 1794.768 kb on + strandat 1794.768 kb on + strandat 1794.768 kb on + strandat 1794.769 kb on - strandat 1794.769 kb on - strandat 1794.781 kb on + strandat 1794.801 kb on + strandat 1794.801 kb on + strandat 1795.019 kb on + strand, within ymfMat 1795.053 kb on + strand, within ymfMat 1795.059 kb on + strand, within ymfMat 1795.127 kb on + strandat 1795.203 kb on + strand, within ymfLat 1795.555 kb on + strand, within ymfLat 1795.555 kb on + strand, within ymfLat 1795.570 kb on + strand, within ymfLat 1796.723 kb on + strandat 1796.723 kb on + strandat 1796.723 kb on + strandat 1796.723 kb on + strandat 1796.728 kb on - strandat 1796.858 kb on + strandat 1796.859 kb on - strandat 1796.895 kb on + strandat 1796.906 kb on + strandat 1796.906 kb on + strandat 1796.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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1,794,691 + OKFHMN_09610 0.89 +1.0
1,794,715 + -0.1
1,794,768 + -0.7
1,794,768 + +0.3
1,794,768 + +0.0
1,794,768 + +0.3
1,794,769 - +0.1
1,794,769 - -0.0
1,794,781 + +1.0
1,794,801 + +0.7
1,794,801 + +0.1
1,795,019 + ymfM OKFHMN_09615 0.65 +1.3
1,795,053 + ymfM OKFHMN_09615 0.75 +0.2
1,795,059 + ymfM OKFHMN_09615 0.76 +0.9
1,795,127 + +0.9
1,795,203 + ymfL OKFHMN_09620 0.12 -1.2
1,795,555 + ymfL OKFHMN_09620 0.76 +1.2
1,795,555 + ymfL OKFHMN_09620 0.76 -0.5
1,795,570 + ymfL OKFHMN_09620 0.79 +0.2
1,796,723 + -2.0
1,796,723 + -3.5
1,796,723 + -0.9
1,796,723 + +0.3
1,796,728 - +0.1
1,796,858 + -0.6
1,796,859 - -0.9
1,796,895 + -0.6
1,796,906 + +0.0
1,796,906 + +0.5
1,796,907 - -1.6

Or see this region's nucleotide sequence