Strain Fitness in Escherichia coli ECRC100 around OKFHMN_08055

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_08050 and OKFHMN_08055 are separated by 207 nucleotidesOKFHMN_08055 and tolC are separated by 102 nucleotides OKFHMN_08050: OKFHMN_08050 - Putative RTX family exoprotein, at 1,471,491 to 1,487,057 _08050 OKFHMN_08055: OKFHMN_08055 - adhesin, at 1,487,265 to 1,491,650 _08055 OKFHMN_08060: tolC - transporter, at 1,491,753 to 1,493,108 tolC Position (kb) 1487 1488 1489 1490 1491 1492Strain fitness (log2 ratio) -2 -1 0 1 2at 1486.394 kb on + strandat 1486.404 kb on + strandat 1486.405 kb on - strandat 1486.436 kb on + strandat 1486.483 kb on - strandat 1486.483 kb on - strandat 1486.485 kb on + strandat 1486.485 kb on + strandat 1486.499 kb on - strandat 1486.557 kb on - strandat 1486.563 kb on + strandat 1486.653 kb on - strandat 1486.655 kb on + strandat 1486.656 kb on - strandat 1486.659 kb on - strandat 1486.710 kb on - strandat 1486.799 kb on - strandat 1486.898 kb on + strandat 1486.898 kb on + strandat 1486.902 kb on - strandat 1487.018 kb on - strandat 1487.060 kb on + strandat 1487.061 kb on - strandat 1487.123 kb on + strandat 1487.123 kb on + strandat 1487.193 kb on - strandat 1487.267 kb on - strandat 1487.496 kb on - strandat 1487.496 kb on - strandat 1487.654 kb on + strandat 1487.655 kb on - strandat 1487.655 kb on - strandat 1487.695 kb on + strandat 1487.756 kb on + strand, within OKFHMN_08055at 1487.828 kb on + strand, within OKFHMN_08055at 1487.828 kb on + strand, within OKFHMN_08055at 1487.828 kb on + strand, within OKFHMN_08055at 1487.829 kb on - strand, within OKFHMN_08055at 1487.860 kb on + strand, within OKFHMN_08055at 1487.861 kb on - strand, within OKFHMN_08055at 1487.894 kb on + strand, within OKFHMN_08055at 1487.975 kb on + strand, within OKFHMN_08055at 1487.975 kb on + strand, within OKFHMN_08055at 1488.194 kb on + strand, within OKFHMN_08055at 1488.195 kb on - strand, within OKFHMN_08055at 1488.215 kb on + strand, within OKFHMN_08055at 1488.312 kb on - strand, within OKFHMN_08055at 1488.314 kb on + strand, within OKFHMN_08055at 1488.315 kb on - strand, within OKFHMN_08055at 1488.520 kb on - strand, within OKFHMN_08055at 1488.546 kb on - strand, within OKFHMN_08055at 1488.600 kb on - strand, within OKFHMN_08055at 1488.600 kb on - strand, within OKFHMN_08055at 1488.601 kb on + strand, within OKFHMN_08055at 1488.601 kb on + strand, within OKFHMN_08055at 1488.602 kb on - strand, within OKFHMN_08055at 1488.605 kb on + strand, within OKFHMN_08055at 1488.605 kb on + strand, within OKFHMN_08055at 1488.621 kb on - strand, within OKFHMN_08055at 1488.623 kb on + strand, within OKFHMN_08055at 1488.624 kb on - strand, within OKFHMN_08055at 1488.701 kb on + strand, within OKFHMN_08055at 1488.702 kb on - strand, within OKFHMN_08055at 1488.818 kb on + strand, within OKFHMN_08055at 1488.820 kb on + strand, within OKFHMN_08055at 1488.821 kb on - strand, within OKFHMN_08055at 1488.938 kb on + strand, within OKFHMN_08055at 1488.939 kb on - strand, within OKFHMN_08055at 1488.939 kb on - strand, within OKFHMN_08055at 1488.996 kb on - strand, within OKFHMN_08055at 1489.198 kb on + strand, within OKFHMN_08055at 1489.208 kb on + strand, within OKFHMN_08055at 1489.209 kb on - strand, within OKFHMN_08055at 1489.498 kb on + strand, within OKFHMN_08055at 1489.518 kb on - strand, within OKFHMN_08055at 1489.601 kb on + strand, within OKFHMN_08055at 1489.816 kb on - strand, within OKFHMN_08055at 1490.192 kb on + strand, within OKFHMN_08055at 1490.198 kb on + strand, within OKFHMN_08055at 1490.248 kb on - strand, within OKFHMN_08055at 1490.314 kb on + strand, within OKFHMN_08055at 1490.315 kb on - strand, within OKFHMN_08055at 1490.315 kb on - strand, within OKFHMN_08055at 1490.493 kb on - strand, within OKFHMN_08055at 1490.551 kb on - strand, within OKFHMN_08055at 1490.553 kb on + strand, within OKFHMN_08055at 1490.792 kb on + strand, within OKFHMN_08055at 1490.793 kb on - strand, within OKFHMN_08055at 1490.837 kb on + strand, within OKFHMN_08055at 1490.880 kb on - strand, within OKFHMN_08055at 1490.909 kb on + strand, within OKFHMN_08055at 1490.909 kb on + strand, within OKFHMN_08055at 1490.981 kb on + strand, within OKFHMN_08055at 1490.982 kb on - strand, within OKFHMN_08055at 1491.003 kb on - strand, within OKFHMN_08055at 1491.078 kb on + strand, within OKFHMN_08055at 1491.079 kb on - strand, within OKFHMN_08055at 1491.111 kb on - strand, within OKFHMN_08055at 1491.232 kb on - strandat 1491.346 kb on - strandat 1491.378 kb on - strandat 1491.483 kb on - strandat 1491.484 kb on + strandat 1491.485 kb on - strandat 1491.566 kb on - strandat 1491.570 kb on - strandat 1491.695 kb on + strandat 1491.714 kb on + strandat 1491.737 kb on - strandat 1491.768 kb on + strandat 1491.781 kb on - strandat 1491.859 kb on + strandat 1491.860 kb on - strandat 1491.915 kb on + strand, within tolCat 1491.916 kb on - strand, within tolCat 1492.282 kb on + strand, within tolC

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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1,486,394 + -0.5
1,486,404 + +0.0
1,486,405 - -1.7
1,486,436 + -0.1
1,486,483 - +0.2
1,486,483 - -0.5
1,486,485 + +0.0
1,486,485 + +0.9
1,486,499 - -0.3
1,486,557 - -0.1
1,486,563 + +0.0
1,486,653 - -1.4
1,486,655 + -1.6
1,486,656 - -0.6
1,486,659 - +1.7
1,486,710 - +0.4
1,486,799 - -0.8
1,486,898 + +0.4
1,486,898 + -0.3
1,486,902 - -1.4
1,487,018 - -0.5
1,487,060 + -0.6
1,487,061 - -0.0
1,487,123 + +0.7
1,487,123 + +0.7
1,487,193 - +0.5
1,487,267 - +0.7
1,487,496 - -1.8
1,487,496 - -0.1
1,487,654 + -0.7
1,487,655 - +0.1
1,487,655 - +0.3
1,487,695 + +1.7
1,487,756 + OKFHMN_08055 0.11 +0.7
1,487,828 + OKFHMN_08055 0.13 -0.0
1,487,828 + OKFHMN_08055 0.13 -0.9
1,487,828 + OKFHMN_08055 0.13 +0.2
1,487,829 - OKFHMN_08055 0.13 -1.1
1,487,860 + OKFHMN_08055 0.14 +0.4
1,487,861 - OKFHMN_08055 0.14 +2.2
1,487,894 + OKFHMN_08055 0.14 -0.1
1,487,975 + OKFHMN_08055 0.16 +0.2
1,487,975 + OKFHMN_08055 0.16 +1.5
1,488,194 + OKFHMN_08055 0.21 +0.4
1,488,195 - OKFHMN_08055 0.21 -1.6
1,488,215 + OKFHMN_08055 0.22 +0.3
1,488,312 - OKFHMN_08055 0.24 +0.8
1,488,314 + OKFHMN_08055 0.24 +1.7
1,488,315 - OKFHMN_08055 0.24 -1.1
1,488,520 - OKFHMN_08055 0.29 -1.4
1,488,546 - OKFHMN_08055 0.29 -0.5
1,488,600 - OKFHMN_08055 0.30 -0.1
1,488,600 - OKFHMN_08055 0.30 +0.2
1,488,601 + OKFHMN_08055 0.30 -0.8
1,488,601 + OKFHMN_08055 0.30 +0.2
1,488,602 - OKFHMN_08055 0.30 +1.7
1,488,605 + OKFHMN_08055 0.31 -0.2
1,488,605 + OKFHMN_08055 0.31 -0.1
1,488,621 - OKFHMN_08055 0.31 +0.5
1,488,623 + OKFHMN_08055 0.31 -0.7
1,488,624 - OKFHMN_08055 0.31 -0.1
1,488,701 + OKFHMN_08055 0.33 -0.1
1,488,702 - OKFHMN_08055 0.33 +0.4
1,488,818 + OKFHMN_08055 0.35 -0.3
1,488,820 + OKFHMN_08055 0.35 +0.3
1,488,821 - OKFHMN_08055 0.35 -0.7
1,488,938 + OKFHMN_08055 0.38 +0.7
1,488,939 - OKFHMN_08055 0.38 -0.8
1,488,939 - OKFHMN_08055 0.38 +1.0
1,488,996 - OKFHMN_08055 0.39 +1.0
1,489,198 + OKFHMN_08055 0.44 +0.5
1,489,208 + OKFHMN_08055 0.44 +2.7
1,489,209 - OKFHMN_08055 0.44 -0.9
1,489,498 + OKFHMN_08055 0.51 -1.1
1,489,518 - OKFHMN_08055 0.51 +0.2
1,489,601 + OKFHMN_08055 0.53 +1.1
1,489,816 - OKFHMN_08055 0.58 +0.1
1,490,192 + OKFHMN_08055 0.67 +1.0
1,490,198 + OKFHMN_08055 0.67 +0.2
1,490,248 - OKFHMN_08055 0.68 -0.7
1,490,314 + OKFHMN_08055 0.70 -0.4
1,490,315 - OKFHMN_08055 0.70 -1.1
1,490,315 - OKFHMN_08055 0.70 -0.1
1,490,493 - OKFHMN_08055 0.74 +1.5
1,490,551 - OKFHMN_08055 0.75 +0.2
1,490,553 + OKFHMN_08055 0.75 +1.2
1,490,792 + OKFHMN_08055 0.80 +0.6
1,490,793 - OKFHMN_08055 0.80 -0.7
1,490,837 + OKFHMN_08055 0.81 +0.0
1,490,880 - OKFHMN_08055 0.82 +1.3
1,490,909 + OKFHMN_08055 0.83 +0.6
1,490,909 + OKFHMN_08055 0.83 -0.5
1,490,981 + OKFHMN_08055 0.85 -0.8
1,490,982 - OKFHMN_08055 0.85 -0.2
1,491,003 - OKFHMN_08055 0.85 +0.3
1,491,078 + OKFHMN_08055 0.87 +0.2
1,491,079 - OKFHMN_08055 0.87 +0.2
1,491,111 - OKFHMN_08055 0.88 -0.7
1,491,232 - +0.6
1,491,346 - -1.1
1,491,378 - +0.7
1,491,483 - +0.1
1,491,484 + +1.7
1,491,485 - -0.3
1,491,566 - +0.4
1,491,570 - +0.4
1,491,695 + -0.8
1,491,714 + -0.1
1,491,737 - -1.3
1,491,768 + -0.1
1,491,781 - -0.6
1,491,859 + +0.4
1,491,860 - +1.4
1,491,915 + tolC OKFHMN_08060 0.12 +0.3
1,491,916 - tolC OKFHMN_08060 0.12 -1.7
1,492,282 + tolC OKFHMN_08060 0.39 -0.1

Or see this region's nucleotide sequence