Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdpB and kdpC are separated by 8 nucleotides kdpC and kdpD overlap by 8 nucleotides
OKFHMN_07065: kdpB - potassium-transporting ATPase subunit KdpB, at 1,267,840 to 1,269,888
kdpB
OKFHMN_07070: kdpC - K(+)-transporting ATPase subunit C, at 1,269,897 to 1,270,469
kdpC
OKFHMN_07075: kdpD - two-component system sensor histidine kinase KdpD, at 1,270,462 to 1,273,146
kdpD
Position (kb) 1269
1270
1271 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1268.964 kb on - strand, within kdpB at 1269.135 kb on - strand, within kdpB at 1269.140 kb on + strand, within kdpB at 1269.141 kb on - strand, within kdpB at 1269.481 kb on - strand, within kdpB at 1269.499 kb on - strand, within kdpB at 1269.525 kb on - strand, within kdpB at 1269.528 kb on + strand, within kdpB at 1269.529 kb on - strand, within kdpB at 1269.838 kb on - strand at 1269.844 kb on - strand at 1269.863 kb on + strand at 1269.907 kb on + strand at 1269.929 kb on + strand at 1269.929 kb on + strand at 1269.930 kb on - strand at 1269.947 kb on + strand at 1270.038 kb on - strand, within kdpC at 1270.057 kb on + strand, within kdpC at 1270.086 kb on + strand, within kdpC at 1270.125 kb on + strand, within kdpC at 1270.186 kb on + strand, within kdpC at 1270.186 kb on + strand, within kdpC at 1270.187 kb on - strand, within kdpC at 1270.381 kb on - strand, within kdpC at 1270.451 kb on - strand at 1270.455 kb on - strand at 1270.479 kb on - strand at 1270.479 kb on - strand at 1270.623 kb on + strand at 1270.827 kb on + strand, within kdpD at 1270.827 kb on + strand, within kdpD at 1271.050 kb on + strand, within kdpD at 1271.050 kb on + strand, within kdpD at 1271.050 kb on + strand, within kdpD at 1271.225 kb on + strand, within kdpD at 1271.225 kb on + strand, within kdpD at 1271.225 kb on + strand, within kdpD at 1271.226 kb on - strand, within kdpD at 1271.314 kb on + strand, within kdpD at 1271.314 kb on + strand, within kdpD at 1271.379 kb on - strand, within kdpD at 1271.453 kb on - strand, within kdpD at 1271.466 kb on + strand, within kdpD
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 1,268,964 - kdpB OKFHMN_07065 0.55 -2.3 1,269,135 - kdpB OKFHMN_07065 0.63 +0.1 1,269,140 + kdpB OKFHMN_07065 0.63 +0.2 1,269,141 - kdpB OKFHMN_07065 0.63 +0.2 1,269,481 - kdpB OKFHMN_07065 0.80 +0.4 1,269,499 - kdpB OKFHMN_07065 0.81 +1.7 1,269,525 - kdpB OKFHMN_07065 0.82 +0.7 1,269,528 + kdpB OKFHMN_07065 0.82 -0.4 1,269,529 - kdpB OKFHMN_07065 0.82 +0.0 1,269,838 - -1.5 1,269,844 - -0.5 1,269,863 + +1.7 1,269,907 + +1.5 1,269,929 + -0.3 1,269,929 + -0.1 1,269,930 - +2.3 1,269,947 + -0.3 1,270,038 - kdpC OKFHMN_07070 0.25 -0.1 1,270,057 + kdpC OKFHMN_07070 0.28 -0.4 1,270,086 + kdpC OKFHMN_07070 0.33 -1.0 1,270,125 + kdpC OKFHMN_07070 0.40 -1.8 1,270,186 + kdpC OKFHMN_07070 0.50 +0.8 1,270,186 + kdpC OKFHMN_07070 0.50 +0.2 1,270,187 - kdpC OKFHMN_07070 0.51 +0.1 1,270,381 - kdpC OKFHMN_07070 0.84 +0.5 1,270,451 - +0.1 1,270,455 - -1.6 1,270,479 - +0.8 1,270,479 - -0.1 1,270,623 + -0.3 1,270,827 + kdpD OKFHMN_07075 0.14 -0.6 1,270,827 + kdpD OKFHMN_07075 0.14 +1.1 1,271,050 + kdpD OKFHMN_07075 0.22 +0.2 1,271,050 + kdpD OKFHMN_07075 0.22 -0.0 1,271,050 + kdpD OKFHMN_07075 0.22 -1.0 1,271,225 + kdpD OKFHMN_07075 0.28 -0.3 1,271,225 + kdpD OKFHMN_07075 0.28 -0.2 1,271,225 + kdpD OKFHMN_07075 0.28 -2.2 1,271,226 - kdpD OKFHMN_07075 0.28 +1.7 1,271,314 + kdpD OKFHMN_07075 0.32 -0.6 1,271,314 + kdpD OKFHMN_07075 0.32 -0.5 1,271,379 - kdpD OKFHMN_07075 0.34 +1.2 1,271,453 - kdpD OKFHMN_07075 0.37 -0.1 1,271,466 + kdpD OKFHMN_07075 0.37 +2.7
Or see this region's nucleotide sequence