Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06635

Experiment: EV146

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_06620 and OKFHMN_06625 overlap by 4 nucleotidesOKFHMN_06625 and OKFHMN_06630 overlap by 4 nucleotidesOKFHMN_06630 and OKFHMN_06635 are separated by 530 nucleotidesOKFHMN_06635 and OKFHMN_06640 are separated by 242 nucleotidesOKFHMN_06640 and int are separated by 531 nucleotides OKFHMN_06615: OKFHMN_06615 - cruciferin, at 1,178,595 to 1,178,777 _06615 OKFHMN_06620: OKFHMN_06620 - DUF1382 domain-containing protein, at 1,178,750 to 1,178,941 _06620 OKFHMN_06625: OKFHMN_06625 - DUF1382 domain-containing protein, at 1,178,938 to 1,179,021 _06625 OKFHMN_06630: OKFHMN_06630 - Cell division protein ZapA, at 1,179,018 to 1,179,233 _06630 OKFHMN_06635: OKFHMN_06635 - hypothetical protein, at 1,179,764 to 1,180,366 _06635 OKFHMN_06640: OKFHMN_06640 - hypothetical protein, at 1,180,609 to 1,180,776 _06640 OKFHMN_06645: int - Integrase, at 1,181,308 to 1,182,078 int Position (kb) 1179 1180 1181Strain fitness (log2 ratio) -1 0 1 2at 1178.776 kb on - strandat 1179.418 kb on + strandat 1179.420 kb on + strandat 1179.457 kb on - strandat 1179.761 kb on - strandat 1179.950 kb on - strand, within OKFHMN_06635at 1180.100 kb on + strand, within OKFHMN_06635at 1180.164 kb on + strand, within OKFHMN_06635at 1180.460 kb on - strandat 1180.500 kb on - strandat 1180.520 kb on + strandat 1180.606 kb on + strandat 1180.606 kb on + strandat 1180.730 kb on + strand, within OKFHMN_06640at 1180.798 kb on - strandat 1180.798 kb on - strandat 1180.819 kb on + strandat 1180.819 kb on + strandat 1180.936 kb on + strandat 1180.936 kb on + strandat 1181.060 kb on + strandat 1181.060 kb on + strandat 1181.062 kb on + strandat 1181.062 kb on + strandat 1181.064 kb on + strandat 1181.064 kb on + strandat 1181.065 kb on - strandat 1181.075 kb on - strandat 1181.078 kb on - strandat 1181.083 kb on + strandat 1181.084 kb on - strandat 1181.229 kb on + strandat 1181.230 kb on - strandat 1181.320 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV146
remove
1,178,776 - -0.2
1,179,418 + -0.4
1,179,420 + -1.7
1,179,457 - -1.3
1,179,761 - -0.4
1,179,950 - OKFHMN_06635 0.31 -1.7
1,180,100 + OKFHMN_06635 0.56 +1.7
1,180,164 + OKFHMN_06635 0.66 +0.7
1,180,460 - +0.8
1,180,500 - +0.4
1,180,520 + +0.7
1,180,606 + +0.7
1,180,606 + +0.3
1,180,730 + OKFHMN_06640 0.72 +0.2
1,180,798 - +0.1
1,180,798 - -1.6
1,180,819 + +1.2
1,180,819 + +0.3
1,180,936 + +1.7
1,180,936 + +1.5
1,181,060 + +1.1
1,181,060 + -0.3
1,181,062 + +0.3
1,181,062 + -0.9
1,181,064 + +0.8
1,181,064 + +0.3
1,181,065 - -0.8
1,181,075 - +2.7
1,181,078 - +1.7
1,181,083 + -0.4
1,181,084 - -1.5
1,181,229 + +1.0
1,181,230 - -0.7
1,181,320 - -0.6

Or see this region's nucleotide sequence