Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05885

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybjP and artP are separated by 217 nucleotidesartP and artI are separated by 17 nucleotidesartI and artQ are separated by 6 nucleotides OKFHMN_05880: ybjP - lipoprotein, at 1,040,210 to 1,040,725 ybjP OKFHMN_05885: artP - arginine ABC transporter ATP-binding protein ArtP, at 1,040,943 to 1,041,671 artP OKFHMN_05890: artI - Putative ABC transporter arginine-binding protein 2, at 1,041,689 to 1,042,420 artI OKFHMN_05895: artQ - arginine ABC transporter permease ArtQ, at 1,042,427 to 1,043,143 artQ Position (kb) 1040 1041 1042Strain fitness (log2 ratio) -2 -1 0 1 2at 1040.194 kb on + strandat 1040.226 kb on + strandat 1040.237 kb on - strandat 1040.286 kb on - strand, within ybjPat 1040.287 kb on + strand, within ybjPat 1040.293 kb on + strand, within ybjPat 1040.354 kb on + strand, within ybjPat 1040.355 kb on - strand, within ybjPat 1040.360 kb on + strand, within ybjPat 1040.674 kb on + strandat 1040.823 kb on - strandat 1040.823 kb on - strandat 1040.835 kb on + strandat 1040.895 kb on - strandat 1040.897 kb on + strandat 1040.897 kb on + strandat 1040.912 kb on + strandat 1040.912 kb on + strandat 1040.912 kb on + strandat 1040.913 kb on - strandat 1040.916 kb on + strandat 1040.931 kb on - strandat 1040.948 kb on + strandat 1040.966 kb on + strandat 1040.966 kb on + strandat 1041.213 kb on + strand, within artPat 1041.214 kb on - strand, within artPat 1041.344 kb on + strand, within artPat 1041.355 kb on - strand, within artPat 1041.428 kb on - strand, within artPat 1041.518 kb on + strand, within artPat 1041.596 kb on + strand, within artPat 1041.651 kb on - strandat 1041.999 kb on - strand, within artIat 1042.001 kb on + strand, within artIat 1042.040 kb on + strand, within artIat 1042.041 kb on - strand, within artIat 1042.090 kb on + strand, within artIat 1042.117 kb on + strand, within artIat 1042.200 kb on + strand, within artIat 1042.200 kb on + strand, within artIat 1042.398 kb on - strandat 1042.622 kb on - strand, within artQ

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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1,040,194 + -0.3
1,040,226 + +1.3
1,040,237 - +1.7
1,040,286 - ybjP OKFHMN_05880 0.15 +1.1
1,040,287 + ybjP OKFHMN_05880 0.15 -2.1
1,040,293 + ybjP OKFHMN_05880 0.16 +0.7
1,040,354 + ybjP OKFHMN_05880 0.28 +1.2
1,040,355 - ybjP OKFHMN_05880 0.28 +0.1
1,040,360 + ybjP OKFHMN_05880 0.29 +1.1
1,040,674 + -0.3
1,040,823 - -0.4
1,040,823 - +0.4
1,040,835 + -2.1
1,040,895 - +0.7
1,040,897 + +2.7
1,040,897 + -0.3
1,040,912 + -0.2
1,040,912 + -0.5
1,040,912 + +0.7
1,040,913 - -1.3
1,040,916 + +0.6
1,040,931 - -0.9
1,040,948 + -0.7
1,040,966 + +0.4
1,040,966 + +0.5
1,041,213 + artP OKFHMN_05885 0.37 +1.3
1,041,214 - artP OKFHMN_05885 0.37 -0.7
1,041,344 + artP OKFHMN_05885 0.55 -0.7
1,041,355 - artP OKFHMN_05885 0.57 +0.1
1,041,428 - artP OKFHMN_05885 0.67 +0.3
1,041,518 + artP OKFHMN_05885 0.79 +1.7
1,041,596 + artP OKFHMN_05885 0.90 +0.5
1,041,651 - +0.7
1,041,999 - artI OKFHMN_05890 0.42 +0.6
1,042,001 + artI OKFHMN_05890 0.43 -0.6
1,042,040 + artI OKFHMN_05890 0.48 +1.1
1,042,041 - artI OKFHMN_05890 0.48 +0.5
1,042,090 + artI OKFHMN_05890 0.55 +0.8
1,042,117 + artI OKFHMN_05890 0.58 -0.5
1,042,200 + artI OKFHMN_05890 0.70 +0.7
1,042,200 + artI OKFHMN_05890 0.70 +0.2
1,042,398 - +0.0
1,042,622 - artQ OKFHMN_05895 0.27 -0.6

Or see this region's nucleotide sequence