Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05465

Experiment: EV146

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntycaI and ihfB are separated by 206 nucleotidesihfB and rpsA are separated by 159 nucleotides OKFHMN_05460: ycaI - ComEC family protein, at 919,942 to 922,206 ycaI OKFHMN_05465: ihfB - integration host factor subunit beta, at 922,413 to 922,697 ihfB OKFHMN_05470: rpsA - 30S ribosomal protein S1, at 922,857 to 924,530 rpsA Position (kb) 922 923Strain fitness (log2 ratio) -2 -1 0 1 2at 921.425 kb on - strand, within ycaIat 921.607 kb on + strand, within ycaIat 921.669 kb on - strand, within ycaIat 921.781 kb on - strand, within ycaIat 921.890 kb on - strand, within ycaIat 921.891 kb on + strand, within ycaIat 922.025 kb on - strandat 922.062 kb on - strandat 922.093 kb on + strandat 922.602 kb on - strand, within ihfB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV146
remove
921,425 - ycaI OKFHMN_05460 0.65 +1.0
921,607 + ycaI OKFHMN_05460 0.74 +0.9
921,669 - ycaI OKFHMN_05460 0.76 -0.7
921,781 - ycaI OKFHMN_05460 0.81 +2.7
921,890 - ycaI OKFHMN_05460 0.86 +1.0
921,891 + ycaI OKFHMN_05460 0.86 -0.4
922,025 - +1.7
922,062 - -0.3
922,093 + -1.5
922,602 - ihfB OKFHMN_05465 0.66 -1.8

Or see this region's nucleotide sequence