Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04985

Experiment: EV146

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_04975 and OKFHMN_04980 overlap by 56 nucleotidesOKFHMN_04980 and OKFHMN_04985 are separated by 465 nucleotidesOKFHMN_04985 and tra5 are separated by 204 nucleotidestra5 and tnp-IS3 overlap by 1 nucleotides OKFHMN_04975: OKFHMN_04975 - hypothetical protein, at 831,442 to 831,555 _04975 OKFHMN_04980: OKFHMN_04980 - lysis protein, at 831,500 to 832,024 _04980 OKFHMN_04985: OKFHMN_04985 - PerC family transcriptional regulator, at 832,490 to 832,804 _04985 OKFHMN_04990: tra5 - IS3 family transposase, at 833,009 to 833,659 tra5 OKFHMN_04995: tnp-IS3 - IS3 family transposase, at 833,659 to 833,985 tnp-IS3 Position (kb) 832 833Strain fitness (log2 ratio) -1 0 1 2at 831.510 kb on + strandat 831.511 kb on - strandat 832.475 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV146
remove
831,510 + -1.6
831,511 - +2.7
832,475 - -0.8

Or see this region's nucleotide sequence