Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04480 and OKFHMN_04485 are separated by 268 nucleotides OKFHMN_04485 and fimA are separated by 42 nucleotides fimA and fimC are separated by 85 nucleotides fimC and fimD are separated by 52 nucleotides
OKFHMN_04480: OKFHMN_04480 - hypothetical protein, at 729,812 to 729,922
_04480
OKFHMN_04485: OKFHMN_04485 - hypothetical protein, at 730,191 to 730,814
_04485
OKFHMN_04490: fimA - fimbrial protein, at 730,857 to 731,417
fimA
OKFHMN_04495: fimC - P pilus assembly protein, chaperone PapD, at 731,503 to 732,204
fimC
OKFHMN_04500: fimD - fimbrial protein, at 732,257 to 734,779
fimD
Position (kb) 730
731
732 Strain fitness (log2 ratio) -1
0
1
2 at 730.402 kb on + strand, within OKFHMN_04485 at 730.916 kb on + strand, within fimA at 731.017 kb on + strand, within fimA at 731.257 kb on + strand, within fimA at 731.409 kb on + strand at 731.657 kb on - strand, within fimC at 731.665 kb on - strand, within fimC at 731.665 kb on - strand, within fimC at 731.835 kb on - strand, within fimC at 731.835 kb on - strand, within fimC at 731.963 kb on - strand, within fimC at 732.011 kb on - strand, within fimC at 732.039 kb on + strand, within fimC at 732.040 kb on - strand, within fimC at 732.110 kb on + strand, within fimC at 732.202 kb on + strand at 732.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 730,402 + OKFHMN_04485 0.34 -0.0 730,916 + fimA OKFHMN_04490 0.11 +0.1 731,017 + fimA OKFHMN_04490 0.29 -0.6 731,257 + fimA OKFHMN_04490 0.71 -0.7 731,409 + +0.1 731,657 - fimC OKFHMN_04495 0.22 +0.7 731,665 - fimC OKFHMN_04495 0.23 +0.1 731,665 - fimC OKFHMN_04495 0.23 +0.8 731,835 - fimC OKFHMN_04495 0.47 +0.3 731,835 - fimC OKFHMN_04495 0.47 +0.5 731,963 - fimC OKFHMN_04495 0.66 +2.0 732,011 - fimC OKFHMN_04495 0.72 +0.9 732,039 + fimC OKFHMN_04495 0.76 +1.7 732,040 - fimC OKFHMN_04495 0.76 +1.4 732,110 + fimC OKFHMN_04495 0.86 -0.7 732,202 + +0.7 732,363 - +0.8
Or see this region's nucleotide sequence