Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02700

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespM1 and nleG are separated by 183 nucleotides OKFHMN_02700: espM1 - T3SS effector guanine nucleotide exchange factor EspM1, at 432,648 to 433,238 espM1 OKFHMN_02705: nleG - T3SS effector E3 ubiquitin-protein ligase NleG, at 433,422 to 434,069 nleG Position (kb) 432 433 434Strain fitness (log2 ratio) -2 -1 0 1at 432.135 kb on - strandat 432.243 kb on + strandat 432.304 kb on - strandat 432.395 kb on - strandat 432.468 kb on - strandat 432.524 kb on - strandat 432.564 kb on - strandat 432.589 kb on + strandat 432.634 kb on - strandat 432.850 kb on - strand, within espM1at 432.879 kb on - strand, within espM1at 433.009 kb on - strand, within espM1at 433.009 kb on - strand, within espM1at 433.231 kb on - strandat 433.314 kb on + strandat 433.900 kb on + strand, within nleG

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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432,135 - -0.1
432,243 + +1.1
432,304 - -1.0
432,395 - -2.6
432,468 - -1.6
432,524 - +0.1
432,564 - -0.6
432,589 + -1.0
432,634 - +0.9
432,850 - espM1 OKFHMN_02700 0.34 +0.1
432,879 - espM1 OKFHMN_02700 0.39 -1.0
433,009 - espM1 OKFHMN_02700 0.61 +0.7
433,009 - espM1 OKFHMN_02700 0.61 -1.9
433,231 - -0.4
433,314 + -0.6
433,900 + nleG OKFHMN_02705 0.74 -0.4

Or see this region's nucleotide sequence