Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01225

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimC and fimA are separated by 41 nucleotidesfimA and ydeS are separated by 13 nucleotidesydeS and ydeR are separated by 12 nucleotides OKFHMN_01220: fimC - fimbrial chaperone protein FimC, at 137,554 to 138,264 fimC OKFHMN_01225: fimA - type 1 fimbrial major subunit FimA, at 138,306 to 140,957 fimA OKFHMN_01230: ydeS - Uncharacterized fimbrial-like protein YdeS, at 140,971 to 141,501 ydeS OKFHMN_01235: ydeR - Uncharacterized fimbrial-like protein YdeR, at 141,514 to 142,017 ydeR Position (kb) 138 139 140 141Strain fitness (log2 ratio) -1 0 1at 139.913 kb on - strand, within fimAat 140.114 kb on + strand, within fimAat 140.221 kb on + strand, within fimAat 140.232 kb on + strand, within fimAat 141.674 kb on - strand, within ydeRat 141.723 kb on + strand, within ydeR

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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139,913 - fimA OKFHMN_01225 0.61 -0.8
140,114 + fimA OKFHMN_01225 0.68 -1.3
140,221 + fimA OKFHMN_01225 0.72 -0.3
140,232 + fimA OKFHMN_01225 0.73 -1.4
141,674 - ydeR OKFHMN_01235 0.32 -1.5
141,723 + ydeR OKFHMN_01235 0.41 +0.1

Or see this region's nucleotide sequence